Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 293 4e-74 seq2371 161 2e-34 seq6 159 7e-34 seq3 84.2 4e-11 >seq4 Length=50002108 Score = 293 bits (324), Expect = 4e-74 Identities = 583/854 (68%), Gaps = 22/854 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| | |||| ||||||||||||||| | || || Sbjct 15358585 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGATCTC 15358644 Query 42360 GCCAAGGACACGGCCGGCTGGGAG----TCACTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 || ||||| || ||||||| ||| | | |||| || | ||| |||| Sbjct 15358645 TCCGGAGACACACGCGACTGGGAGAATCTCAACGACGGAGAGCGCCAC----TTCATCAA 15358700 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 | || | || ||||||||||||||||| ||||| || ||| |||||||| ||| || | Sbjct 15358701 ACACGTCCTAGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTGGAGAACCTCGCCTCCCG 15358760 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||||||| || || ||| || |||||||| |||||||||||||||||| || || Sbjct 15358761 GTTCATGTCCGACGTCCAGGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGAT 15358820 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| |||| | |||||| |||| |||||| |||| | Sbjct 15358821 TGAGAACATCCACTCAGAGATGTATAGCCTCCTGCTCGACACCTACATCAAGGATAACAA 15358880 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 ||| | || || ||| |||||| ||||| || |||||| || ||||||||| | Sbjct 15358881 GGAGAGGGACCATCTCTTCCGGGCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCA 15358940 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCA-ACGTTCGGCGAGAGGCTGGTAGCC 42713 ||||| | || |||||||| | || | || || |||| |||||| | || ||| Sbjct 15358941 ATGGGCCATGAAGTGGATCGA-----CGGATCTCAGACTTTCGCGGAGAGGATCGTCGCC 15358995 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 || || ||| || || ||||||||||| || |||| ||| ||||||||||||||| Sbjct 15358996 TTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAG 15359055 Query 42774 CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || | | ||||| || || |||||||| ||||| || ||| || ||||||||| Sbjct 15359056 AAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCGAGAGACGAGGGG 15359115 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 || || | || || ||||| |||| ||| | | | ||| |||| | || || Sbjct 15359116 CTTCACTGCGATTTCGCCTG---CCTGATCTATACCTTGTTGAGGACGAAGCTCACGGAG 15359172 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 ||||| || | | ||| | || || ||||||||||||| |||||| | || | Sbjct 15359173 GAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGT-GTGC-G 15359230 Query 42954 TCGCT-GCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 |||| ||||| | |||| || ||||||| || || ||| | |||| ||| ||| Sbjct 15359231 ACGCTCTTCCGTGCGCGTTGGTGGGGATGAACCGTGATCTGATGAGTCAGTATATCGAGT 15359290 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 ||| || || || || || | | || | | | ||| | || | Sbjct 15359291 TCGTGGCGGATAGGCTTTTGGGCGCGCTTGGGTACGGGAAGGTGTACGGTGTGGCGAATC 15359350 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | || || | |||||| |||||| | |||| ||||||||||| || |||||| | | Sbjct 15359351 CGTTTGATTGGATGGAGTTGATCTCGCTTCAGGGGAAGACCAACTTCTTTGAGAAGAGGG 15359410 Query 43132 TCGCCGACTACCAG 43145 | | ||| |||||| Sbjct 15359411 TTGGCGATTACCAG 15359424 >seq2371 Length=6673 Score = 161 bits (178), Expect = 2e-34 Identities = 278/403 (69%), Gaps = 17/403 (4%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| | | |||||| ||||||||||| || | |||| ||||||||| Sbjct 6244 GATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGC 6303 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGA 42396 |||||| | ||||| || | ||||| || ||||||| ||| | | | || Sbjct 6304 CGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACGACGGCGA 6363 Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 ||| | ||| ||||| || | || ||||||||||||||||| ||||| || ||| Sbjct 6364 GCGACAC----TTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCC 6419 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 ||||| || ||| || | |||||| || || ||| || ||||| ||| ||||| Sbjct 6420 TCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCT 6479 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC---A 42573 ||||||||||||| ||||| |||||| | ||||| ||| |||| || || ||| Sbjct 6480 ACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTA---CAGTCTCCTCTTAG 6536 Query 42574 ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633 |||| |||||| || | ||| | || || ||| || || |||||||| | Sbjct 6537 ACACTTACATCAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATCC 6596 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA 42676 | ||| | ||||| ||||| | ||||| | || |||||||| Sbjct 6597 CTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGGATCGA 6639 >seq6 Length=53636577 Score = 159 bits (176), Expect = 7e-34 Identities = 293/429 (68%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 ||| | | |||||| ||||||||||| || | |||| ||||||||||||||| Sbjct 17375698 ACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAG 17375757 Query 42352 TTGACCTGGCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAG 42404 | ||||| || | ||||| || ||||||| ||| | | | || || | Sbjct 17375758 TCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACGACGGCGAGCGCCAC- 17375816 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| ||||| || | || ||||||||||||||||| ||||| || ||| ||||| Sbjct 17375817 ---TTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAAT 17375873 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || ||| || | |||||| || || ||| || ||||| ||| ||||||||||||| Sbjct 17375874 CTCGCCTCCCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTC 17375933 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 ||||| || || |||||| | ||||| ||| ||||| | || | | || |||||| Sbjct 17375934 CAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCTTGTTAGATACTTACATC 17375993 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 || | ||| | || || ||| || || ||||| || || ||| ||||| Sbjct 17375994 AAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACCATCCCTTGCGTCAAG 17376053 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 |||||||| | ||||| | || |||||||| || || | | | |||| ||||||| Sbjct 17376054 AAGAAGGCCCAATGGGCCTTGAAGTGGATCGATAGGCCTCAGG---CCTTCGCCGAGAGG 17376110 Query 42705 CTGGTAGCC 42713 | || ||| Sbjct 17376111 ATCGTGGCC 17376119 >seq3 Length=29132933 Score = 84.2 bits (92), Expect = 4e-11 Identities = 200/296 (68%), Gaps = 16/296 (5%) Strand=Plus/Plus Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGG 42780 || ||| || ||||||||||| || |||| ||| ||||||||||||||| | ||| Sbjct 13038976 CGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAACGAGG 13039035 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGG----GCTG 42836 || || || || | |||||||| || || | ||| | ||||| || |||| Sbjct 13039036 GCTC-ATACCTGGTTTGACCTTCTCCAATGAGTTGATCTCTCGAGACGACGGCTTTGCTG 13039094 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 | || || ||||| |||| ||| | | ||| ||| || | | || ||||| Sbjct 13039095 C-----GATTTCGCCTG---CCTGATCTATACACTCCTGAGGACGAATCTCACGGAGGAG 13039146 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCG 42956 || || | | ||| || ||| ||||| |||||||||| |||||| | | || Sbjct 13039147 CGCGTGAAGTCGATCGTCTGGGACGCCGTCGAGATCGAGAGGGAGTTTGTGTGCTACGCG 13039206 Query 42957 CTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 || |||||| | ||||| || |||||||| ||| | ||| | |||| ||| ||| Sbjct 13039207 CT-CCCGTGCGCGCTGGTGGGGATGAACCATGACATGATGAGTCAGTATATCGAGT 13039261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944213177933760