Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 seq2 100 3e-16 >seq5 Length=45943323 Score = 120 bits (132), Expect = 3e-22 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 20216 TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAA 20275 || ||||| || ||||| |||| || |||||||| ||||| |||| | || || Sbjct 37434426 TGGATAAAATCACCGGGAACAAGATCACACACATGAGCTAGCATGCAAGTCAGAAGAGAG 37434485 Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||| ||||||||||| || || || | ||||| || | || | |||||||| |||| Sbjct 37434486 TAGGAAGCAATGTTAAACGGCACACCAAGGCCCATATCCGCTGAACGCTGATACATCTGA 37434545 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || ||||| || || || || || || || |||| ||| || || ||||||||| Sbjct 37434546 CACGAGAGCTCCCCTTCCGCCACGTAGAACTGTGCGAACATGTGGCACGGAGGAAGCGCC 37434605 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455 |||| | | ||| | |||||||| || | | ||||| | | ||| | ||||| Sbjct 37434606 ATCAGCTTGAGGTCAGAAGGGTTCCAAGCCGATAATATGATACGCCGATCATCAGGATTG 37434665 Query 20456 TTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCA 20515 || || || || | | | | || || ||||| || ||||| ||||| |||||| Sbjct 37434666 TTCTTGATCTTGTCGATTACATCTGCCAGCTGATCAAATCCTTGGCCAGTATAATCAGCA 37434725 Query 20516 T 20516 | Sbjct 37434726 T 37434726 >seq2 Length=43799612 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| || || | || | ||||| || ||||||||||||||| || || | | Sbjct 41543388 ACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAGGCAATGTTAAAAGGTACACCAAGA 41543447 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| || ||||| || | || || ||||| Sbjct 41543448 CCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAAAAC 41543507 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 ||| |||| ||| || || ||||||||||||| | | ||| | || ||||| || Sbjct 41543508 TGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 41543567 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 |||| || || | | ||||| || || || || || Sbjct 41543568 GACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 41543605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441313898799840