Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq4 89.7 4e-13 seq1 86.0 5e-12 seq3 82.4 6e-11 >seq6 Length=53636577 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || ||||||| |||||||| ||||||||| |||||||| || || Sbjct 30640175 CCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 30640116 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| || | ||||| ||||| || ||||| |||||||| ||| || Sbjct 30640115 AGCGTCCTCCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 30640056 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || |||||| ||| || ||| || | || | | || | |||||| Sbjct 30640055 ATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTG---TCGATCGTGTCGGATGATTCG 30639999 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||||||||| ||||||||| Sbjct 30639998 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 30639945 >seq4 Length=50002108 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || ||||| |||||||| ||||||||| |||||||| || || Sbjct 49702186 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 49702127 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| ||||| || || ||||||||||| ||| || Sbjct 49702126 AGGGTGCGTCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGGG 49702067 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || || ||||| || || ||| | | | | || | || ||| Sbjct 49702066 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 49702007 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| || || || ||||| |||||||| ||||| ||||| Sbjct 49702006 TCGAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 49701960 >seq1 Length=26309735 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || || ||||| ||||| || ||||||||| ||||||||||| | | Sbjct 10591978 CCTCCCCTCAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCG-C 10591920 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | |||| |||| ||||| ||||| || ||||| |||||||| ||| ||| Sbjct 10591919 GAGCGTCCTTCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGCGG 10591860 Query 34020 CACGCTCTCTTTGTCC 34035 | | || |||||| Sbjct 10591859 GATCCCTTCCTTGTCC 10591844 >seq3 Length=29132933 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || || ||||||||||| ||||||||| |||||||| || |||||| || Sbjct 9516883 AGCCTGAGAACGAGATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCTG 9516824 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| || | ||||||||||| || || || | |||||||||| Sbjct 9516823 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGATCC 9516779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397010736722152