Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq6 98.7 2e-15 seq1 93.3 9e-14 >seq4 Length=50002108 Score = 150 bits (166), Expect = 4e-31 Identities = 570/882 (65%), Gaps = 27/882 (3%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || || | || ||||| ||||| |||||||| | || Sbjct 15358556 TCTGCATGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAAGCCT 15358615 Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAAC 242986 |||| |||||| |||||||||| ||| || |||| ||||||| ||||| | Sbjct 15358616 CCTTCTGGACCGCCGAGGAAGTCGATCTCTCCGGAGACACACGCGACTGG---GAGAATC 15358672 Query 242987 TCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATG 243046 |||| |||| || || || |||||||||||| | |||| || ||||| | |||||| | Sbjct 15358673 TCAACGACGGAGAGCGCCACTTCATCAAACACGTCCTAGCCTTCTTCGCCGCCTCCGACG 15358732 Query 243047 GTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCA 243105 | || || |||| || || || || | ||| || || ||| | ||||| Sbjct 15358733 GAATCGTCCTGGAGAACCTCGCCTCCCGGTTCA-TGTCCGACGTCCAGGTCTCCGAGGCG 15358791 Query 243106 CGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGC 243161 || || || | | ||| | ||| | ||| ||||| || || ||| Sbjct 15358792 CGTGCCTTCTACGGCTTCCAGATCGCGATTGA--GAA--CATCCACTCAGAGATGTATAG 15358847 Query 243162 TCTTCTTATCGACGCGCTTATTTCA--GATGAACAA-GAGCGAAACGAGCTTTTCGACGC 243218 || || |||| | | || ||| ||| ||||| ||| | || | || ||| || Sbjct 15358848 CCTCCTGCTCGA--CACCTACATCAAGGAT-AACAAGGAGAGGGACCATCTCTTCCGGGC 15358904 Query 243219 CATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACC 243278 |||||| | ||| || || || ||||| ||||||| ||||||| | || Sbjct 15358905 CATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGA--- 15358961 Query 243279 CGG---TAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTT 243335 ||| | | | || || ||| | ||||||||| | ||||| ||||| || | || Sbjct 15358962 CGGATCTCAGACTTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTGGAAGGGATCTTCTT 15359021 Query 243336 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGG 243395 ||||| || |||||| | ||||| ||||| ||| || | |||||||| || Sbjct 15359022 CTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGAC 15359081 Query 243396 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTAT 243455 | || |||||| | ||| | |||||||| |||||| | |||| || || Sbjct 15359082 CTTCTCCAACGAGCTGATCTCGAGAGACGAGGGGCTTCACTGCGATTTCGCCTGCCTGAT 15359141 Query 243456 GTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGC 243515 ||| | | | || ||||| | || || || ||| | || || Sbjct 15359142 CTATACCTTGTTGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATCGTGTGCGACGC 15359201 Query 243516 AGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAA 243575 || || | ||| | ||| || | ||||||||| |||| ||| | | | || ||||| Sbjct 15359202 GGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCTCTTCCGTGCGCGTTGGTGGGGATGAA 15359261 Query 243576 CTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGG 243635 | ||| || ||| | ||||| ||||| ||||| || || | |||| ||||||||| Sbjct 15359262 CCGTGATCTGATGAGTCAGTATATCGAGTTCGTGGCGGATAGGCTTTTGGGCGCGCTTGG 15359321 Query 243636 TTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCA 243695 || | ||| |||||| ||| || |||| | |||||| | || |||||||| Sbjct 15359322 GTACGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTCA 15359381 Query 243696 AGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||| || |||||||| || ||| | || | ||||| || Sbjct 15359382 GGGGAAGACCAACTTCTTTGAGAAGAGGGTTGGCGATTACCA 15359423 >seq6 Length=53636577 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| || || || ||| | || ||||| ||||| ||||| || | || Sbjct 17375677 TCTGCATGTTCCCGATTCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCT 17375736 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAA 242984 |||| |||||| |||||||||| ||||| | |||| | ||||||| | || Sbjct 17375737 CCTTCTGGACCGCCGAGGAAGTCGACCTCTC--CCAAGACACCCGCGACTGGGAGCAAAA 17375794 Query 242985 ACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGA 243044 ||||| |||| ||| || || |||||||||||| | || | || ||||| | |||||| Sbjct 17375795 CCTCAACGACGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGA 17375854 Query 243045 TGGTATTGTGATGGAAAATCT 243065 || || || | || ||||| Sbjct 17375855 CGGGATCGTCCTCGAGAATCT 17375875 >seq1 Length=26309735 Score = 93.3 bits (102), Expect = 9e-14 Identities = 269/414 (65%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 149077 CATTGTGAACTTTCGCTTCGCAGAATTTTCTGATCAGAACCGGGAACACGTGACCGTTAT 149136 |||| | | ||||||||||| ||| | || |||||| | || | ||||||| ||| | Sbjct 7325006 CATTATTAGCTTTCGCTTCGTGGAACCTCCTCATCAGAGCAGGAAGCACGTGAGAGTTCT 7325065 Query 149137 TAAGATCGTATCGGTCATTTGGACCGCTGAGATTCGTCGGCATGACTGAGACGAAATTAC 149196 | | | || || ||||| |||||||||||||||| | |||| | || | Sbjct 7325066 CCGGGTGAAAATTATCGTTCTGACCGTAGAGATTCGTCGGCATGCCGGAGATGGCATCCC 7325125 Query 149197 ATCCATATTGTTTTCTGTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGT 149256 | || || | ||||| || | ||||||| ||| || ||||| || || || |||| Sbjct 7325126 ACTGATGCTGAATCCTGTACGCTTGGCACATCTTGATCCCAGCGATCTTGGCGATGGCGT 7325185 Query 149257 ATGGTTTGTTAGTGGGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTGATAGGATTTT 149316 | | ||| ||||| || || || || | ||| | ||| || || | Sbjct 7325186 ACCACTCGTTGGTGGGCTCTAGTGGGCCGGTGAGGAGAGCTGATTCGGGTATGGGCTGAG 7325245 Query 149317 GAGCTTCTTTTGGGTAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACA 149376 |||| ||| ||||| ||||| | ||||| || | |||||| || |||||| Sbjct 7325246 GAGCGAATTTGGGGTAGATGCAGGAGGAGCCGAGGAAGAGGAGTTTCTTGACTCCGTGGG 7325305 Query 149377 TTTTGGACGCATGAATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCC 149436 | | || | || || || || ||||| ||| ||||| || ||||| || | Sbjct 7325306 TGTAGGCGGAGTGGATCACGTTAGTCTGGATCTGGAGATTGACGGCGATAAAGTCAGCTG 7325365 Query 149437 CGAAGGAGTTGTTCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGT 149490 | ||| |||||| ||||| || || || ||||| || || ||||| | |||| Sbjct 7325366 GGTAGGTGTTGTTGGCGTGGATCCCGCCGACTTTGGCCGCGGCGAGGATGACGT 7325419 Score = 93.3 bits (102), Expect = 9e-14 Identities = 269/414 (65%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 149077 CATTGTGAACTTTCGCTTCGCAGAATTTTCTGATCAGAACCGGGAACACGTGACCGTTAT 149136 |||| | | ||||||||||| ||| | || |||||| | || | ||||||| ||| | Sbjct 7342226 CATTATTAGCTTTCGCTTCGTGGAACCTCCTCATCAGAGCAGGAAGCACGTGAGAGTTCT 7342285 Query 149137 TAAGATCGTATCGGTCATTTGGACCGCTGAGATTCGTCGGCATGACTGAGACGAAATTAC 149196 | | | || || ||||| |||||||||||||||| | |||| | || | Sbjct 7342286 CCGGGTGAAAATTATCGTTCTGACCGTAGAGATTCGTCGGCATGCCGGAGATGGCATCCC 7342345 Query 149197 ATCCATATTGTTTTCTGTAAGCATCACACATCTCGATTCCGGCGATTTTCGCTATCGCGT 149256 | || || | ||||| || | ||||||| ||| || ||||| || || || |||| Sbjct 7342346 ACTGATGCTGAATCCTGTACGCTTGGCACATCTTGATCCCAGCGATCTTGGCGATGGCGT 7342405 Query 149257 ATGGTTTGTTAGTGGGTTCGAGAAATCCTGTCATCAGATATTCTTCCTTGATAGGATTTT 149316 | | ||| ||||| || || || || | ||| | ||| || || | Sbjct 7342406 ACCACTCGTTGGTGGGCTCTAGTGGGCCGGTGAGGAGAGCTGATTCGGGTATGGGCTGAG 7342465 Query 149317 GAGCTTCTTTTGGGTAAATGCAACTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACA 149376 |||| ||| ||||| ||||| | ||||| || | |||||| || |||||| Sbjct 7342466 GAGCGAATTTGGGGTAGATGCAGGAGGAGCCGAGGAAGAGGAGTTTCTTGACTCCGTGGG 7342525 Query 149377 TTTTGGACGCATGAATGACATTCGTCTGAATCATCAGATTATCGTGAATAAAATCGCCCC 149436 | | || | || || || || ||||| ||| ||||| || ||||| || | Sbjct 7342526 TGTAGGCGGAGTGGATCACGTTAGTCTGGATCTGGAGATTGACGGCGATAAAGTCAGCTG 7342585 Query 149437 CGAAGGAGTTGTTCGCGTGAATACCTCCTACTTTTGCAGCCGCGAGAAATACGT 149490 | ||| |||||| ||||| || || || ||||| || || ||||| | |||| Sbjct 7342586 GGTAGGTGTTGTTGGCGTGGATCCCGCCGACTTTGGCCGCGGCGAGGATGACGT 7342639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102729141180600