Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq8 93.3 5e-14 >seq4 Length=50002108 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| | ||||| || || || |||||| ||| || |||||||| || Sbjct 15359121 GTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 15359062 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| |||| || || || ||||||||||| || ||||| || Sbjct 15359061 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 15359002 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||| || | || | ||| || || | | || | ||| | ||||||||| || Sbjct 15359001 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 15358945 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||| || ||||| ||| ||| || |||| ||||| ||| || Sbjct 15358944 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 15358903 Score = 109 bits (120), Expect = 7e-19 Identities = 216/313 (69%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 8619 TCAAAGGTTGCGGCACATTGGCTCGTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCG 8678 ||||| || || || |||||| | ||| |||||||| |||| || ||||| ||| Sbjct 9183742 TCAAAAGTCGCCGCGCATTGGTACACTGTGAACTACCGAGAGGCCTACGGCCTCTTCGCG 9183801 Query 8679 TGCTCCGGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAG 8738 ||| ||| || | |||||||||||||| ||||| || || | | |||||||| | | Sbjct 9183802 TGCAACGGGATCTTGTTCAACCACGAGTCTCCCCGGCGCGGGGAGAACTTCGTGACGAGG 9183861 Query 8739 AAGATCACCGATGGTATCAAACA-AATC---GTCGCGGGTG-AGAGGGAGTTCATTGAAT 8793 ||||||| ||| || | | ||| |||| | || ||||| || || | Sbjct 9183862 AAGATCA-CGAGGGCCTTGGGGAGGATCAAGGTCG-GTCTGCAGAGGAAGCTCTT---CC 9183916 Query 8794 TGGGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGT 8853 | ||||||||| | || |||||||||||| ||| |||||| || || || |||| Sbjct 9183917 TCGGGAACCTCCAGGCGTCGAGGGACTGGGGGTTCGCGGGGGACTACGTGGAGGCAATGT 9183976 Query 8854 GGCTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACT 8913 || | | || || || || |||||||| || || || || || |||| |||| | || Sbjct 9183977 GGATGATGCTGCAGCAGGAGGAGGCGGATGATTACGTGGTGGCCACGGAGGAGTCGCATA 9184036 Query 8914 CCGTCAGGGAGTT 8926 |||| |||||| Sbjct 9184037 CCGTTGAGGAGTT 9184049 >seq8 Length=29681327 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/459 (65%), Gaps = 20/459 (4%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || || || | || | ||| |||||| |||||| | ||| || || Sbjct 964089 CGGTCAAACCGCCCCGGTCTCAGCAACGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 964148 Query 10847 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903 || | |||| | || || |||| ||||| |||||||||||||||||||| ||| Sbjct 964149 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 964205 Query 10904 TTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACC---CGCACTGCGT---TGC 10957 || | || || || | ||||||||| | ||||| | || | | | ||| Sbjct 964206 TTAAGCGTCTGCTCTCTCTCATCATTCCC------TCCACCGATCCCAGTCCCTCTCTGC 964259 Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACT 11017 |||| || || || || || || | ||| || || ||||| ||| || ||| | Sbjct 964260 CTACCAACAGCATCTATCTCGTCCACGAAGACAATGCACGGAGCATTCTCCTTGGCCTTT 964319 Query 11018 TCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCG 11077 | || | ||| ||||| ||| ||||| |||||||||||||| || ||||| | | Sbjct 964320 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACAAACTCAGAA 964379 Query 11078 GCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11136 | | | || | || ||| || || | |||||| || ||||| || | || || Sbjct 964380 CCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGT 964438 Query 11137 CTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCC 11196 || || || ||||| || |||| ||| |||| ||||||| |||||| | Sbjct 964439 TTTACCAGTACCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGC 964498 Query 11197 AAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 | | | | |||||| | || || || ||||| | ||| Sbjct 964499 AGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTC 964537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597273883162080