Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6 102 6e-17 seq7 93.3 3e-14 seq9 89.7 4e-13 seq3 86.0 4e-12 seq5 84.2 2e-11 >seq6 Length=53636577 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || |||||||| || ||| | ||| ||||||| Sbjct 30640157 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTCCTCCCGTCTTCG 30640098 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || ||| | |||| |||||| ||||| ||| || ||||||||||| | Sbjct 30640097 AGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGA 30640038 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || || ||| ||| || |||| ||| || || || Sbjct 30640037 ATCTTGGCCTTGACATTGTCGATCGTGTCGGATGATTCGACCTCTAGGGTTATCGTCTTC 30639978 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || || || ||||| ||||| || ||||| |||| Sbjct 30639977 CCCGTTAGGGTTTTCACAAAGATCTGCATTTTTG 30639944 >seq7 Length=27187321 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| ||| ||| | | ||||||| | || Sbjct 17979948 ATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGGCCGTCTTCCAGCTG 17980007 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | |||| ||||| ||||| ||| |||||||||||||| || || Sbjct 17980008 TTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTT 17980067 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || || || ||| ||| || || | ||| || || || || || Sbjct 17980068 GGCTTTGACATTGTCGATGGTGTCGGATGATTCGACCTCGAGGGTGATCGTCTTCCCCGT 17980127 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 17980128 TAGGGTTTTCACGAAGATCTGCATCTTTG 17980156 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || ||||| || |||||||| || | | | | | || ||| Sbjct 456921 ACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCATCCTCT 456862 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | |||||| ||||| ||| || ||||||||||| | Sbjct 456861 AGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGA 456802 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| || | || ||||| | | | |||| || || | || ||||| || Sbjct 456801 ATTTTGGCTTTGACGTTGTCGATAGTGTTGGAACTTTCCACCTCAAGAGTGATGGTCTTG 456742 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||||| || || || ||||| Sbjct 456741 CCGGTCAAGGTTTTGACGAAGATCTGCAT 456713 >seq9 Length=38354807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14951 CACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTG 15009 |||| |||| | ||| || || |||||||| || ||||| || ||||||||||| || Sbjct 21315348 CACCGCGCAGACGTAACACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAATCAGCCA 21315407 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | || ||||||||| | || | |||||| ||||| ||| Sbjct 21315408 AG-GTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 21315466 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| ||| ||| || || | || || || ||| | || || Sbjct 21315467 ATCCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACC 21315526 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || ||||| || || | |||||| |||||| Sbjct 21315527 TCCAAAGTGATAGTCTTCCCGGTCAGTGTCTTAATAAAAATCTGCATA 21315574 >seq3 Length=29132933 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || |||||||| || || || || ||||||||||| || || | | | || || Sbjct 16258416 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAAGG-TGCGACCATCCTC 16258474 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || |||||| | || | |||||| ||||| || || ||||||||||| Sbjct 16258475 GAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTG 16258534 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| ||| | || |||||||| | || || || || ||||| || || Sbjct 16258535 GATCTTGGCTTTGACATTGTCAATAGTATCCGAGCTCTCCACCTCCAAAGTAATAGTCTT 16258594 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| || ||||| || |||||| Sbjct 16258595 TCCAGTCAAAGTCTTGACAAAGATCTGCATA 16258625 >seq5 Length=45943323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | || || || || ||||| || || ||||| || |||||||| || Sbjct 20718127 CCACCTCTAAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCCGCA 20718186 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| | ||||||||||||| |||||| | |||||| || ||| Sbjct 20718187 AGGGTTCTACCATCTTCAAGTTGTTTGCCAGCGAATATCAGCCTCTGTTGATCCGGTGGT 20718246 Query 15070 ATTCCTTCCTTGTC 15083 ||||| |||||||| Sbjct 20718247 ATTCCCTCCTTGTC 20718260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357345498386660