Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq8 89.7 6e-13 >seq4 Length=50002108 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| | ||||| || || || |||||| |||||| |||||||| || Sbjct 15359121 GTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 15359062 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| |||| || || || |||||||||||||| ||||| || Sbjct 15359061 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 15359002 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 ||||| || | | | ||| || || | | || | || | ||||||||| || Sbjct 15359001 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 15358945 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || ||||| ||| ||| || |||| ||||| ||| || Sbjct 15358944 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 15358903 >seq8 Length=29681327 Score = 89.7 bits (98), Expect = 6e-13 Identities = 197/293 (67%), Gaps = 18/293 (6%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || || || | || | ||| |||||| |||||| | ||| || || Sbjct 964089 CGGTCAAACCGCCCCGGTCTCAGCAACGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 964148 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || | |||| | || || |||| || || |||||||||||||||||||| ||| Sbjct 964149 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 964205 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACC---CGCACTGCGT---TGC 12872 || | || || || | ||||||||| | ||||| | || | | | ||| Sbjct 964206 TTAAGCGTCTGCTCTCTCTCATCATTCCCT------CCACCGATCCCAGTCCCTCTCTGC 964259 Query 12873 TTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACT 12932 |||| || || || || ||||| | ||| || || ||||| ||| || ||| | Sbjct 964260 CTACCAACAGCATCTATCTCGTCCACGAAGACAATGCACGGAGCATTCTCCTTGGCCTTT 964319 Query 12933 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | || | ||| || || ||| ||||| ||||||||||||||||| ||||| Sbjct 964320 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACAAA 964372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613425327464160