Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7 102 6e-17 seq3 87.8 1e-12 seq9 84.2 2e-11 >seq7 Length=27187321 Score = 102 bits (112), Expect = 6e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||| || | || ||||| || || || || || || Sbjct 456940 GCCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGC 456881 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| |||| || | || ||||| |||| || | ||||||||| |||| || Sbjct 456880 CAAAGTGCGACCATCCTCTAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCCGGTGG 456821 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| ||||| ||||| ||| | | |||| || |||| | |||||| Sbjct 456820 GATGCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATA--GTGTTGGAACTTTCC 456763 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || || | ||| || || || || || || ||||| ||||||||||||||| || Sbjct 456762 ACCTCAAGAGTGATGGTCTTGCCGGTCAAGGTTTTGACGAAGATCTGCATGCCG 456709 >seq3 Length=29132933 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || |||||||| || |||| || | || || ||| | || Sbjct 16258890 TCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGACCATCCTCGAGCTGCTTTCCGGCGAAG 16258949 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||||||||||| || | ||||| ||||| || || ||| | ||| Sbjct 16258950 ATGAGACGCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTT 16259008 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| | ||||||||| || | || ||||| || ||||| | |||||| || Sbjct 16259009 GTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGTGAGAGTTTTCAC 16259068 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 16259069 GAAGATCTGCAT 16259080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | || || || || || || ||||| ||| Sbjct 16258398 CCACCACGAAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 16258457 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | || || || | || || | ||||||||| |||| || Sbjct 16258458 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 16258517 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || || ||| | | ||| || || || | ||| |||| Sbjct 16258518 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATA--GTATCCGAGCTCTCCA 16258575 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||| || || || || ||||| || || ||||||||||| Sbjct 16258576 CCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 16258624 >seq9 Length=38354807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | || || || || || || || || ||| Sbjct 21327603 CCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 21327662 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| ||||| || || ||| |||| || || | |||||| |||| || Sbjct 21327663 AAAGTGCGACCATCTTCCAACTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGG 21327722 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | || || || || || || ||||| ||| | | || |||| | ||| ||||| Sbjct 21327723 ATCCCCTCCTTATCTTGGATCTTAGCTTTAA-CGTTGTCAATGGTGTCGGAGCTCTCCAC 21327781 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || || || || || || ||||||||||| Sbjct 21327782 CTCCAAAGTGATGGTCTTTCCGGTCAACGTCTTGACAAAGATCTGCAT 21327829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347324402438708