Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq92 116 1e-20 seq7 111 6e-19 seq6 98.7 4e-15 seq2 96.9 1e-14 seq8 95.1 5e-14 seq5 93.3 2e-13 seq9 91.5 6e-13 seq3 89.7 2e-12 >seq92 Length=51219 Score = 116 bits (128), Expect = 1e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| ||||||| || ||||| ||||||||| | ||||| |||| Sbjct 31580 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAATGGTCATGTT 31521 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || || ||||||||||| || | ||||||||||||||| ||| || || Sbjct 31520 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCATGGGTTGCTTTCACCGAC 31461 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || ||||||||| | || | |||||||| Sbjct 31460 TCGGAAAGACTTATTGGTGAGGCTGCTAA 31432 >seq7 Length=27187321 Score = 111 bits (122), Expect = 6e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| ||||||| || ||||| ||||||||| | ||||| |||| Sbjct 24349236 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAATGGTCATGTT 24349177 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || || ||||||||||| || | ||||||||||||||| ||| || || Sbjct 24349176 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCATGGGTTGCTTTCACCGAC 24349117 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || |||||||| | || | |||||||| Sbjct 24349116 TCCGAAAGACTCATTGGTGAGGCTGCTAA 24349088 >seq6 Length=53636577 Score = 98.7 bits (108), Expect = 4e-15 Identities = 190/279 (68%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || ||||| ||||| |||||||| | || || ||||| || || || || || ||| Sbjct 21173998 ACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAAGCCACAAAGGACGCCGGTGTGATT 21174057 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||||| ||||| | || || || || || ||||| ||||| || | || ||||| Sbjct 21174058 GCTGGTTTGAATGTGATGCGTATCATCAACGAGCCTACTGCAGCAGCCATTGCCTATGGT 21174117 Query 451451 CT----AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 || | ||| | || | | ||| || ||| | || | |||||| ||||||| Sbjct 21174118 CTTGACAAGAAGGCGACCAGTGTC-GGAGAGAAGAATGTGTTGATCTTTGATCTTGGTGG 21174176 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| ||| ||| | | | ||||| || ||| ||||||| || || || || Sbjct 21174177 TGGTACTTTCGATGTGTCTCTTTTGACCATTGAGGAAGGGATATTTGAGGTGAAAGCTAC 21174236 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || ||||| || ||||| ||| |||| || Sbjct 21174237 AGCTGGAGACACCCATCTCGGTGGTGAGGATTTTGACAA 21174275 >seq2 Length=43799612 Score = 96.9 bits (106), Expect = 1e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || ||||| || |||||||| ||||| |||| || ||| ||||||||||| Sbjct 36642204 GCTGTTATCACTGTGCCTGCTTATTTTAATGACTCACAGAGGACAGCTACTAAAGATGCT 36642263 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||||||||| ||||| ||||| || || || ||| |||| Sbjct 36642264 GGTCGCATTGCTGGGCTGGATGTTCTTCGTATTATCAATGAGCCCACTGCTGCTTCTCTG 36642323 Query 451442 GCATATGG 451449 || ||||| Sbjct 36642324 GCTTATGG 36642331 Score = 89.7 bits (98), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || ||||| ||||||||||||||||| || |||| || ||||||||||| || || Sbjct 28633544 ACGGTTCCGGCTTATTTCAATGATGCTCAGAGGCAGGCTACTAAAGATGCTGGTAGGATC 28633603 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||||| |||| | |||||||||||||| || || ||||| || | ||||| Sbjct 28633604 GCTGGTTTGGATGTGGAGAGGATTATTAATGAACCGACGGCTGCTGCGCTTTCGTATGG 28633662 >seq8 Length=29681327 Score = 95.1 bits (104), Expect = 5e-14 Identities = 190/282 (67%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || |||||||| || || | || | || || |||||||| || || || Sbjct 3229458 ACGGTCCCTGCTTATTTTAACGACTCTCAGAGACAGGCGACTAAAGACGCCGGTTCGATC 3229399 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||||||| ||| | || |||||||| ||||| || || || ||| | || || || Sbjct 3229398 TCTGGTTTAAACGTTTTACGGATTATTAACGAACCGACCGCCGCGGCTATTGCGTACGGT 3229339 Query 451451 CTAGGAAAATCAAAAG-------AAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 ||| || ||||| |||| | || | || |||| | || ||| | || Sbjct 3229338 TTAG----ATAAAAAGGGGACGCAAACCGGTGAGAGGAACGTTTTGATTTTCGATCTAGG 3229283 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 || || || |||| |||| | | | || ||||| || || || || || ||||| Sbjct 3229282 AGGCGGGACGTTTGATGTTTCTTTGTTAACGATCGAAGAAGGCGTCTTCGAGGTGAAGGC 3229223 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || |||||||||||| || ||||||||||| |||| || Sbjct 3229222 CACGGCTGGTGATACTCACCTCGGAGGTGAAGACTTTGACAA 3229181 Score = 89.7 bits (98), Expect = 2e-12 Identities = 183/271 (68%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || |||||||| || || | || | || || |||||||| || || || Sbjct 3237121 ACGGTCCCTGCTTATTTTAACGACTCTCAGAGACAGGCGACTAAAGACGCCGGTTCGATC 3237062 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||||||| ||| | || |||||||| ||||| || || || ||| | || || || Sbjct 3237061 TCTGGTTTAAACGTTTTACGGATTATTAACGAACCGACCGCCGCGGCTATTGCGTACGGT 3237002 Query 451451 CTAGGAAAATCAAAAG-----AAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTG 451505 ||| ||| ||| | |||| | || | || |||| | || ||| | || | Sbjct 3237001 TTAGATAAA--AAAGGGACGCAAACCGGTGAGAGGAACGTTTTGATTTTCGATCTAGGAG 3236944 Query 451506 GAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAA 451565 | || || |||| |||| | | | || ||||| || || || || || ||||| | Sbjct 3236943 GCGGGACGTTTGATGTTTCTTTGTTAACGATCGAAGAAGGCGTCTTCGAGGTGAAGGCCA 3236884 Query 451566 CCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 | |||||||||||| || ||||| ||||| Sbjct 3236883 CGGCTGGTGATACTCACCTCGGAGGCGAAGA 3236853 >seq5 Length=45943323 Score = 93.3 bits (102), Expect = 2e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| ||||||| || ||||| ||||||||| | || || |||| Sbjct 14334443 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAACGGTCATGTT 14334502 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || || ||||||||||| || | ||||||||| ||||| ||| || || Sbjct 14334503 GAAATCATTGCCAATGACCAAGGTAACCGTATTACTCCTTCTTGGGTTGCTTTCACCGAC 14334562 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || || || || | || | |||||||| Sbjct 14334563 TCCGAGAGGCTCATCGGTGAGGCTGCTAA 14334591 Score = 93.3 bits (102), Expect = 2e-13 Identities = 179/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || |||||||||||||| || | ||||| || || |||||||| || ||||| | Sbjct 26495534 GCGTATTTCAATGATGCGCAGAGACAAGCGACAAAGGATGCAGGTGCAATCGCTGGACTT 26495475 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 || || | || || || || || || |||| || || |||| || || |||| ||| Sbjct 26495474 AACGTGGTACGTATAATAAACGAGCCAACAGGTGCAGCCATAGCTTACGGTCTAGACAAA 26495415 Query 451460 TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGAT 451519 |||| | ||| | ||| || |||| | |||| | ||||||||||| ||| Sbjct 26495414 ---AAAGGT---GGAGAGACAAACATCCTAGTGTATGATCTCGGTGGAGGAACATTCGAT 26495361 Query 451520 ACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACT 451579 | | | ||| | || || |||| || |||||||| | |||| | ||| || ||| Sbjct 26495360 GTTAGTATCCTTACCATAGACAATGGAGTCTTTGAAGTCTTGTCAACAAGTGGAGACACT 26495301 Query 451580 CATCTAGGAGGTGAAGATATTGA 451602 ||||| || || ||||| |||| Sbjct 26495300 CATCTCGGTGGAGAAGACTTTGA 26495278 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391140 CAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTT 391199 || || ||||| ||||| || || |||||||| | | || ||| | || ||||||||| Sbjct 20718263 CAGGACAAGGAGGGAATACCACCGGATCAACAGAGGCTGATATTCGCTGGCAAACAACTT 20718204 Query 391200 GAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTA 391259 |||||||| ||||| | ||||| || || || | || || |||| |||||||| || Sbjct 20718203 GAAGATGGTAGAACCCTTGCGGACTACAACATCCAGAAAGAGTCAACTCTTCACTTGGTC 20718144 Query 391260 TTAAGACTGAGAGG 391273 || || || ||||| Sbjct 20718143 TTGAGGCTTAGAGG 20718130 >seq9 Length=38354807 Score = 91.5 bits (100), Expect = 6e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||||||||| ||| |||| || || || |||||| | || || || || Sbjct 21303376 ATGCAGATTTTCGTTAAGACATTGACCGGCAAGACCATTACTTTGGAGGTGGAGAGCTCC 21303317 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| || || ||||| ||||| || || ||||| || || Sbjct 21303316 GACACCATTGATAATGTCAAAGCTAAGATCCAAGACAAGGAGGGTATCCCTCCAGACCAG 21303257 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || || || || || || ||| | || || || ||| Sbjct 21303256 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGACTACAAT 21303197 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | ||||||||||| || || | ||| | ||| Sbjct 21303196 ATCCAAAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGA 21303152 >seq3 Length=29132933 Score = 89.7 bits (98), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| || |||| || ||||| ||||||||| | ||||| |||| Sbjct 16762292 ATAGGGATAGATCTTGGTACTACCTACTCCTGTGTCGGTGTTTACAAGAATGGTCATGTT 16762233 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035 || || ||||| |||||||||||| || | ||| ||||| ||||| |||| || || Sbjct 16762232 GAGATCATAGCTAATGACCAAGGAAACCGTATTACACCTTCCTGGGTTGGTTTCACTGA 16762174 Score = 89.7 bits (98), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| || |||||||| || || | |||||||| ||||||||| | ||||| |||| Sbjct 19468424 ATTGGGATAGATCTTGGTACTACTTACTCATGTGTTGGTGTTTACAAGAATGGTCATGTT 19468483 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035 || || || || |||||||||||| || | ||| ||||| ||||| |||| || || Sbjct 19468484 GAGATCATTGCCAATGACCAAGGAAACCGTATTACACCTTCGTGGGTTGGTTTCACTGA 19468542 Score = 86.0 bits (94), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || || || || || || || || ||| || Sbjct 2317004 ATGCAGATATTCGTGAAAACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 2316945 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || |||| || || || ||||||||||| || ||||| ||||| Sbjct 2316944 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGATCAG 2316885 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | ||||| || ||||| |||||||| ||| | || || || || Sbjct 2316884 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTAGCAGACTACAAC 2316825 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || |||||||| || || Sbjct 2316824 ATCCAGAAGGAGTCTACCCTTCACTTGGTGTT 2316793 Score = 86.0 bits (94), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || || || || || || || || ||| || Sbjct 2324799 ATGCAGATATTCGTGAAAACTCTCACAGGAAAGACCATCACCCTCGAGGTGGAAAGCTCC 2324740 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || |||| || || || ||||||||||| || ||||| ||||| Sbjct 2324739 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGATCAG 2324680 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | ||||| || ||||| |||||||| ||| | || || || || Sbjct 2324679 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTAGCAGACTACAAC 2324620 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || |||||||| || || Sbjct 2324619 ATCCAGAAGGAGTCTACCCTTCACTTGGTGTT 2324588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975448148889008