Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8 136 5e-27 seq1 136 5e-27 seq7 116 5e-21 seq4 116 5e-21 seq6 111 2e-19 seq9 93.3 5e-14 seq3 89.7 6e-13 >seq8 Length=29681327 Score = 136 bits (150), Expect = 5e-27 Identities = 303/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || || || | || | |||| ||||| |||||| | | || ||||| Sbjct 964089 CGGTCAAACCGCCCCGGTCTCAGCAACGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 964148 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| || ||| || |||| ||||| ||||||||||| ||||| ||||| Sbjct 964149 GCAACCACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 964205 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCC 16060 |||| || || || | ||||||||| || | | | |||| | | ||| | || Sbjct 964206 TTAAGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACC 964264 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120 || ||||| ||||| || | |||||| ||||| || ||| || || || || Sbjct 964265 AACAGCATCTATCTCGTCCACGAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAA 964324 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 ||||| || || | | || || ||||| ||||||||||| ||||| | | | | Sbjct 964325 AAGATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACAAACTCAGAACCAG- 964383 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | || | || ||| || ||| || |||||| |||||||| || | ||||| |||| Sbjct 964384 AGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTAC 964443 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 16299 | ||||| || ||| |||||||| ||||| || ||| || ||| || | Sbjct 964444 CAGTACCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGA 964503 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | |||||||| | ||| ||||| ||||| Sbjct 964504 ACCTCTCAGGCTTCTTCAGAAACTCCAC 964531 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247 |||| ||||| | |||||||| |||| || ||||||||||||||| ||||| || || Sbjct 8206429 TTGATATGGCAGTTGATCGTGGATGCTTTATCGATCAAAGTCAAAGTTTGAATATACACA 8206488 Query 113248 TGGA-AAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304 |||| || ||||| || |||| ||| ||||| | ||| | ||| |||||||||| Sbjct 8206489 TGGACAAACCCAACTTTG-CCAAACTCACTTCTTTACACTTCCACACCTGGAAGAAGG 8206545 >seq1 Length=26309735 Score = 136 bits (150), Expect = 5e-27 Identities = 303/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | ||| || ||| ||||| ||||| | | || ||||| Sbjct 2345850 CGGTCAAAACGGCCTGGTCTAAGCAGGGCGGAGTCAAGAATATCCGCTCTGTTGGTTGCA 2345909 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | | ||| |||| | || |||||||||||||||| ||||| ||||||| Sbjct 2345910 GCAACCACGATCACACCAGTGTTACCTT--CAAAACCATCCATCTCCGTCAAGAGCTGGT 2345967 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 ||| || ||||| | || ||||| || | | | |||| | | ||| | || Sbjct 2345968 TAAGCGTCTGTTCTCTCTCGTCATTACCT--CCACCGATTCCAGTTCCTCTCTGCCTACC 2346025 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAA 16120 ||||||||||||||||| | ||||| ||||| || ||| || || || || Sbjct 2346026 GACGGCATCAATCTCATCCACAAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAA 2346085 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 ||||| || || | | || || ||||| ||||||||||| || || | | | | Sbjct 2346086 AAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGAACCTG- 2346144 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | |||| | ||| || ||| || |||||| || |||||| || | || || || | Sbjct 2346145 AGATTGAAAAGAAAGGCACACCAGCTTCACCAGCGATGGCTTTTGCTAACAGTGTTTTTC 2346204 Query 16240 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 16299 | ||||| || ||| ||||||| ||||| || ||| | |||||| || | Sbjct 2346205 CAGTACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCTCGCGCCAACAGCAGTGA 2346264 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | |||||||| | ||| ||||| ||||| Sbjct 2346265 ACCTCTCAGGCTTCTTGAGAAACTCCAC 2346292 >seq7 Length=27187321 Score = 116 bits (128), Expect = 5e-21 Identities = 220/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| ||||| ||||| ||||| || || |||| ||||||||| || | Sbjct 11257574 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 11257631 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | ||| ||||| | | ||| | ||||| |||||||||||||| || || || |||| Sbjct 11257632 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 11257691 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 | || || | ||| || || | ||||| || || || | || |||||||| Sbjct 11257692 AAGGCGCCTTGGCCTTAGCCTTCTCGAACAAATCCC-TA-ACCCTAGACGCACCCACACC 11257749 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 || || | ||| ||||| | | || | || || ||| || ||| | ||| || Sbjct 11257750 GACGAAAAGCTCAACAAACTCAGAAGCCGCGCAGGAGAAGAACGGCACACCGGCTTCTCC 11257809 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 |||| |||| || | ||||||||||| || || || |||| ||||||| || Sbjct 11257810 AGCAACAGCTCTAGCTAACAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACACCC 11257869 Query 16271 TCGTGGAATCTTGGCGCC 16288 | |||||||||||||| Sbjct 11257870 TTTGGGAATCTTGGCGCC 11257887 >seq4 Length=50002108 Score = 116 bits (128), Expect = 5e-21 Identities = 143/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 ||||| || | ||||| ||||||||| | || | || | | || || ||| | Sbjct 15358930 AAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCGGAGAGG 15358986 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || |||| || || || || || || ||||||||||| || ||||||| | || | Sbjct 15358987 ATCGTCGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTC 15359046 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 |||||||||||||| || |||||||| ||||| ||||||||||||||| ||||| | Sbjct 15359047 TGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCGAGA 15359106 Query 102306 GACGAGGGACTCCAC 102320 |||||||| || ||| Sbjct 15359107 GACGAGGGGCTTCAC 15359121 >seq6 Length=53636577 Score = 111 bits (122), Expect = 2e-19 Identities = 285/426 (67%), Gaps = 20/426 (5%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| ||||| || | || | ||||| |||| | || ||| Sbjct 45675222 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTT--CAA 45675279 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | |||||||| | ||| ||||| | ||||||||| || Sbjct 45675280 ACCCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTCCCT---- 45675335 Query 16036 TACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089 ||||| | ||| | |||| | || || ||||| |||||||||| ||||| | Sbjct 45675336 --CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCGATCTCATCAACAAAGACAA 45675393 Query 16090 TGCATGG-TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 |||| || | | | | | | ||| ||| ||||| || || | | ||| || ||| Sbjct 45675394 TGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGATCACGGACCCTCGAGGCACCAACA 45675452 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 || ||||||||||| ||||| | | ||| | || | || ||| || ||| || ||| Sbjct 45675453 CCGACAAACATCTCAACAAACTCAGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTC 45675511 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| || || ||| || || || ||||| || ||||| || ||| || || | Sbjct 45675512 ACCGGCGATAGCTTTCGCCAGCAGCGTCTTCCCAGTACCAGGAGGACCGATAAGCAGAAC 45675571 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||| || ||| || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 45675572 ACCTTTAGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 45675631 Query 16328 AATCTC 16333 | ||| Sbjct 45675632 CACCTC 45675637 Score = 111 bits (122), Expect = 2e-19 Identities = 285/426 (67%), Gaps = 20/426 (5%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| ||||| || | || | ||||| |||| | || ||| Sbjct 45684660 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTT--CAA 45684717 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | |||||||| | ||| ||||| | ||||||||| || Sbjct 45684718 ACCCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTCCCT---- 45684773 Query 16036 TACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089 ||||| | ||| | |||| | || || ||||| |||||||||| ||||| | Sbjct 45684774 --CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCGATCTCATCAACAAAGACAA 45684831 Query 16090 TGCATGG-TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 |||| || | | | | | | ||| ||| ||||| || || | | ||| || ||| Sbjct 45684832 TGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGATCACGGACCCTCGAGGCACCAACA 45684890 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 || ||||||||||| ||||| | | ||| | || | || ||| || ||| || ||| Sbjct 45684891 CCGACAAACATCTCAACAAACTCAGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTC 45684949 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| || || ||| || || || ||||| || ||||| || ||| || || | Sbjct 45684950 ACCGGCGATAGCTTTCGCCAGCAGCGTCTTCCCAGTACCAGGAGGACCGATAAGCAGAAC 45685009 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||| || ||| || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 45685010 ACCTTTAGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 45685069 Query 16328 AATCTC 16333 | ||| Sbjct 45685070 CACCTC 45685075 Score = 89.7 bits (98), Expect = 6e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 113188 TTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA 113247 |||| ||||||| |||||||| |||||||||||||||| |||||| ||||| || || Sbjct 23788906 TTGATATGGCCGTTGATCGTGGATGCTTCATTGATCAAAGCCAAAGTTTGAATATACACA 23788965 Query 113248 TGGA-AAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304 |||| || ||||| || |||| ||| |||| | ||| | ||| |||||| |||| Sbjct 23788966 TGGACAAACCCAACTTTG-CCAAACTCACTTCCTTACACTTCCACACTTGGAAAAAGG 23789022 >seq9 Length=38354807 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 102198 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 102257 || |||| || || ||||||||||| ||| ||||||| | || | ||||||||||| Sbjct 24442624 GCCTGTGCCGAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAA 24442683 Query 102258 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||||| || ||| | ||||||||| ||| | |||||||| ||||| || Sbjct 24442684 CGAGGGCTCATACCTGGTTTGACCTTCTCCAATGAGTTGATCTCTCGAGACGACGG 24442739 >seq3 Length=29132933 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 102266 || || ||||||||||| ||| ||||||| | || | ||||||||||| ||||| ||| Sbjct 13038980 GAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTTCTGGCTCAAGAAACGAGGGCTC 13039039 Query 102267 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 || || ||| | ||||||||| ||| | |||||||| ||||| || Sbjct 13039040 ATACCTGGTTTGACCTTCTCCAATGAGTTGATCTCTCGAGACGACGG 13039086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620659561926720