Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq4 123 3e-23 seq8 118 1e-21 seq6 84.2 3e-11 >seq1 Length=26309735 Score = 131 bits (144), Expect = 2e-25 Identities = 334/501 (67%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || || || ||||||||||| | | ||| || || Sbjct 2345850 CGGTCAAAACGGCCTGGTCTAAGCAGGGCGGAGTCAAGAATATCCGCTCTGTTGGTTGCA 2345909 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | | ||||| | | || ||||| ||||| || || | |||||||| Sbjct 2345910 GCAACCACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 2345969 Query 11623 ATCGTCTGTTCACGCTCATCGTTGG----AGGGCATACCACCTGCCGAACGCTTCTTACC 11678 | ||||||||| | ||| || || | | || ||| | | | || | |||| Sbjct 2345970 AGCGTCTGTTCTCTCTCGTCATTACCTCCACCG-ATTCCAGTTCCT---CTCTGCCTACC 2346025 Query 11679 GACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAA 11738 ||| || ||||||||||| | || || || ||||| || | |||| || ||| Sbjct 2346026 GACGGCATCAATCTCATCCACAAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAA 2346085 Query 11739 AAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA 11798 ||| ||||| || | | || |||||||| || |||||||||||||| | | | || Sbjct 2346086 AAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGAACCTGA 2346145 Query 11799 ACACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 | |||| ||| || ||| || ||||||||||||||| || | || || || | Sbjct 2346146 G-ATTGAAAAGAAAGGCACACCAGCTTCACCAGCGATGGCTTTTGCTAACAGTGTTTTTC 2346204 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT 11917 | ||||| || | |||| |||| || | || |||||| | || ||| || | Sbjct 2346205 CAGTACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCTCGCGCCAACAGCAGTGA 2346264 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCTTGGCGGAGTCG 11976 | | ||||||||||||||| || ||||| | ||| | ||| || | |||||| || Sbjct 2346265 ACCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATGAAG-TCTTGCTTGGCTTCATCT 2346323 Query 11977 ATACCCTCAACATCGGTGAAA 11997 | || |||||||| |||| Sbjct 2346324 ACTCCAGCAACATCGTCGAAA 2346344 >seq4 Length=50002108 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 |||||||| || || | ||||| ||||| || |||| || ||||||||||| || Sbjct 15359120 TGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCCA 15359061 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || ||||| || |||||||| || ||||| ||| Sbjct 15359060 CGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAG 15359001 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||||| |||| | | ||| || |||| |||| ||||| |||||| | ||||| Sbjct 15359000 GCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGATCCGTCGATCCACTTCATGGCCCAT 15358941 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 | |||||| | | | |||||||| || | |||||| Sbjct 15358940 TGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 15358903 >seq8 Length=29681327 Score = 118 bits (130), Expect = 1e-21 Identities = 295/441 (67%), Gaps = 14/441 (3%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| | | ||| || || |||| || | || ||||| | | || || Sbjct 964122 TCAAGAATATCAGCTCTGTTGGTTGCAGCAACCACAATAACACCAGTGTTACCCTCAAAC 964181 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA 11655 || ||||| || || | ||||| || | |||||| || | |||||| || | | Sbjct 964182 CCATCCATCTCAGTCAAGAGCTGATTAAGCGTCTGCTCTCTCTCATCATTC-----CCT- 964235 Query 11656 CCACC--TGCCGAACGCT-TCT---TACCGACAGCGTCAATCTCATCGATGAATACGATA 11709 ||||| | || | || ||| |||| ||||| || ||||| || | ||| || || Sbjct 964236 CCACCGATCCCAGTCCCTCTCTGCCTACCAACAGCATCTATCTCGTCCACGAAGACAATG 964295 Query 11710 CACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCT 11769 ||||| || | |||| || |||||| ||||| || | | || |||||||| Sbjct 964296 CACGGAGCATTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCC 964355 Query 11770 ACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACC 11828 || ||||||||||| || | | |||| | || | ||| || ||| || ||||| Sbjct 964356 ACAAACATCTCAACAAACTCAGAACCAGAG-ATGGAGAAGAAAGGCACACCAGCTTCACC 964414 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 ||| ||||| || | ||||| ||||| |||||||| | |||| |||| ||| | || Sbjct 964415 AGCAATGGCCTTTGCTAACAGAGTTTTACCAGTACCAGGAGGACCAACGAGGAGGACACC 964474 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 |||||| |||||| || | | | |||||||||||| || || ||||| | Sbjct 964475 TTTCGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCAC 964534 Query 11949 CTCCTCAAGTTCCTCCTTGGC 11969 ||| | |||| |||||| Sbjct 964535 TTCCATGAAATCCTGCTTGGC 964555 >seq6 Length=53636577 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGTGTATTCCA 110338 ||| | ||||||||| |||||||||||||||| ||| || || | | |||||||| | Sbjct 23787618 GGGTAAAGCAATAGATGCAAGATTGCACACAGCAGTTTC-CGTTGGACTTGTGTATTCGA 23787560 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGG 110398 ||||| ||||| || |||||| ||||||| ||||| || | |||||| ||| Sbjct 23787559 TGATTTCAGTACATAAATTGGAAGACTTAATGGTACCCAGATTTTGCTGATTGCTTTTCC 23787500 Query 110399 AGTTGCATGCATCCT 110413 ||| |||| ||||| Sbjct 23787499 TGTTACATGAATCCT 23787485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588897401152800