Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq8 140 4e-28 seq7 122 1e-22 seq6 109 6e-19 seq4 102 1e-16 >seq1 Length=26309735 Score = 143 bits (158), Expect = 3e-29 Identities = 303/446 (68%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | ||| || ||| ||||| ||||| | | || || || Sbjct 2345850 CGGTCAAAACGGCCTGGTCTAAGCAGGGCGGAGTCAAGAATATCCGCTCTGTTGGTTGCA 2345909 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | | ||| || | | ||||||||||||||||| ||||| || |||||| Sbjct 2345910 GCAACCACGATCACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAGAGCTGGTTA 2345969 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||| | || ||||| || || | | |||| | | ||| | || | Sbjct 2345970 AGCGTCTGTTCTCTCTCGTCATTACCTC-CAC-CGATTCCAGTTCCTCTCTGCCTACCGA 2346027 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 |||||||||||||||| | |||||||| || || ||| || ||| ||| || | Sbjct 2346028 CGGCATCAATCTCATCCACAAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAA 2346087 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || ||||| || || ||||| ||||||||||| || || | | | | | Sbjct 2346088 GATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACGAACTCAGAACCTG-AG 2346146 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| | ||| || ||| || |||||| || |||||| || | || || || || Sbjct 2346147 ATTGAAAAGAAAGGCACACCAGCTTCACCAGCGATGGCTTTTGCTAACAGTGTTTTTCCA 2346206 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9608 ||||| || ||| ||||||| |||| || ||| | |||||| || | | Sbjct 2346207 GTACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCTCGCGCCAACAGCAGTGAAC 2346266 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||||||||| ||||| Sbjct 2346267 CTCTCAGGCTTCTTGAGAAACTCCAC 2346292 >seq8 Length=29681327 Score = 140 bits (154), Expect = 4e-28 Identities = 301/445 (68%), Gaps = 4/445 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || || || | || | |||| ||||| |||||| | | || || || Sbjct 964089 CGGTCAAACCGCCCCGGTCTCAGCAACGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 964148 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || ||| Sbjct 964149 GCAACCACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTA 964208 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCT-GGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 | || || || | ||||||||| || | | | |||| | | ||| | || || Sbjct 964209 AGCGTCTGCTCTCTCTCATCATTCCCTCCACCGATC-CCAGTCCCTCTCTGCCTACCAAC 964267 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||| ||||| || | ||||||||| || || ||| || ||| ||| || || Sbjct 964268 AGCATCTATCTCGTCCACGAAGACAATGCACGGAGCATTCTCCTTGGCCTTTTTGAAAAG 964327 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 ||| || ||||| || || ||||| ||||||||||| ||||| | | | | | | Sbjct 964328 ATCACGGACCCTCGAAGCACCAACACCCACAAACATCTCAACAAACTCAGAACCAG-AGA 964386 Query 9491 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | || ||| || ||| || |||||| |||||||| || | ||||| ||||| | Sbjct 964387 TGGAGAAGAAAGGCACACCAGCTTCACCAGCAATGGCCTTTGCTAACAGAGTTTTACCAG 964446 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATC 9609 |||| || ||| |||||||| |||| || ||| || ||| || | | | Sbjct 964447 TACCAGGAGGACCAACGAGGAGGACACCTTTCGGGATCCGAGCACCAACCGCAGTGAACC 964506 Query 9610 TCTCAGGTTGCTTGAGAAAATCCAC 9634 ||||||| | ||| ||||| ||||| Sbjct 964507 TCTCAGGCTTCTTCAGAAACTCCAC 964531 >seq7 Length=27187321 Score = 122 bits (134), Expect = 1e-22 Identities = 220/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| ||||| || || ||||| || || |||| ||||||||| || | Sbjct 11257574 AACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--C 11257631 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | ||| ||||| | | ||| | ||||| |||||||||||||| || || ||||| | Sbjct 11257632 CTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATGC 11257691 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || || | || | || || | ||| | |||||| || |||||||| | Sbjct 11257692 AAGGCGCCTTGGCCTTAGCCTTCTCGAACAAATCCCTAACCCTAGACGCACCCACACCGA 11257751 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 | || | ||| ||||| | | || | || || ||| || ||| | ||| || | Sbjct 11257752 CGAAAAGCTCAACAAACTCAGAAGCCGCGCAGGAGAAGAACGGCACACCGGCTTCTCCAG 11257811 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 ||| |||| || | ||||||||||| || || || |||| |||||| | ||||| Sbjct 11257812 CAACAGCTCTAGCTAACAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGA-GACACCCT 11257870 Query 9580 GT-GGAATCTTGGCGCC 9595 | |||||||||||||| Sbjct 11257871 TTGGGAATCTTGGCGCC 11257887 >seq6 Length=53636577 Score = 109 bits (120), Expect = 6e-19 Identities = 280/423 (66%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| || || || | || | ||||| || | | ||||| Sbjct 45675222 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 45675281 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || ||||| | ||| ||||| | ||||||||| || Sbjct 45675282 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTCCCT------ 45675335 Query 9345 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 ||||| | ||| | |||| | || || ||||| |||||||||| |||||||| Sbjct 45675336 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCGATCTCATCAACAAAGACAATG 45675395 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || || ||| | | || ||||| || ||||| ||| || ||||| Sbjct 45675396 CAAGGAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACCCTCGAGGCACCAACACCG 45675455 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||| ||||| | | ||| | || | || ||| || ||| || |||||| Sbjct 45675456 ACAAACATCTCAACAAACTCAGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTCACC 45675514 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || || ||| || || || ||||| || ||||| || ||| || || |||| Sbjct 45675515 GGCGATAGCTTTCGCCAGCAGCGTCTTCCCAGTACCAGGAGGACCGATAAGCAGAACACC 45675574 Query 9578 CCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAAT 9637 || ||| || ||| || | | |||||||| | ||| ||||| ||||| | Sbjct 45675575 TTTAGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCAC 45675634 Query 9638 CTC 9640 ||| Sbjct 45675635 CTC 45675637 Score = 109 bits (120), Expect = 6e-19 Identities = 280/423 (66%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| || || || | || | ||||| || | | ||||| Sbjct 45684660 TCAAGAATGTCTGCTCTATTGGTTGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 45684719 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || ||||| | ||| ||||| | ||||||||| || Sbjct 45684720 CCATCCATCTCAGTTAGCAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTCCCT------ 45684773 Query 9345 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 ||||| | ||| | |||| | || || ||||| |||||||||| |||||||| Sbjct 45684774 CCACCGATTCCTGTCCCTCTTTGCCTACCAACAGCATCGATCTCATCAACAAAGACAATG 45684833 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || || ||| | | || ||||| || ||||| ||| || ||||| Sbjct 45684834 CAAGGAGCGTTCTCCTTGGCCTTCTTGAAAAGATCACGGACCCTCGAGGCACCAACACCG 45684893 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||| ||||| | | ||| | || | || ||| || ||| || |||||| Sbjct 45684894 ACAAACATCTCAACAAACTCAGACCCGG-AGATGGAGAAGAACGGCACACCAGCTTCACC 45684952 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || || ||| || || || ||||| || ||||| || ||| || || |||| Sbjct 45684953 GGCGATAGCTTTCGCCAGCAGCGTCTTCCCAGTACCAGGAGGACCGATAAGCAGAACACC 45685012 Query 9578 CCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAAT 9637 || ||| || ||| || | | |||||||| | ||| ||||| ||||| | Sbjct 45685013 TTTAGGGATCCGAGCACCAACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCAC 45685072 Query 9638 CTC 9640 ||| Sbjct 45685073 CTC 45685075 >seq4 Length=50002108 Score = 102 bits (112), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| |||| || || || || || |||||| || || |||||||| || Sbjct 15359121 GTGAAGCCCCTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCC 15359062 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 15359061 ACGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 15359002 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || || || | | | ||| ||||| | |||| | ||| | ||| ||||| || Sbjct 15359001 GGCGAAGGCGACGATCCTCTCCGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 15358945 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||||| ||||||||| | | || || | || | |||||| Sbjct 15358944 CCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATGGC 15358903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589902067062240