Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq10676 544 9e-150 seq3 159 4e-34 seq3905 118 1e-21 seq2 107 2e-18 seq813 84.2 3e-11 >seq10676 Length=153368 Score = 544 bits (602), Expect = 9e-150 Identities = 698/960 (73%), Gaps = 2/960 (0%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501 |||| |||||||||||| | |||||||| |||| | || ||| | | ||| || Sbjct 1286 TTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTA 1227 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 | ||||||||||| || ||||| || ||||| || || || | ||||| || | || | Sbjct 1226 TCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1167 Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 || ||||| || || ||||| || || || ||||| || |||| | || ||||| Sbjct 1166 CTCTTCTT-TACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 1108 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || || || ||||||||||| ||| | |||||||||||| | || || ||| Sbjct 1107 GGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 1048 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | ||||| | ||||| | | || ||||| | Sbjct 1047 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 988 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || |||||||||||||| ||||||||| || || Sbjct 987 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 928 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | ||||| ||||| ||||| | |||||| ||||||| || || ||| Sbjct 927 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 868 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| ||||| ||||| |||||||||||||||||| | || ||||| || ||| Sbjct 867 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 808 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 || |||||||| ||||| || || |||||| ||| ||||| || | ||||| || || Sbjct 807 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 748 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 |||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| Sbjct 747 CTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 688 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || | || || | ||||| |||||||||||||| |||||||| ||| Sbjct 687 AATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTA 628 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || |||||||| ||||| || | |||||||| |||||| |||||||| || | Sbjct 627 GCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 568 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 | |||| |||||| |||| | || || || ||| || | ||||| || || | ||| Sbjct 567 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 508 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280 || | || ||||| |||||| | ||||||||||| || ||||||||||| |||||| | Sbjct 507 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGT 448 Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340 | ||| | | || |||| |||| || | ||| | || ||| | ||||||||| Sbjct 447 CAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 388 Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 170400 |||||||||||| | ||||| ||||||||||| ||||||||||| ||| ||||||| || Sbjct 387 GTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTCTCCA 328 Score = 385 bits (426), Expect = 6e-102 Identities = 707/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || || || || |||| ||||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | ||| || ||| | || || || || || || Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32159 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | ||| | | |||| || ||||| Sbjct 32160 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32219 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | ||| ||||| Sbjct 32220 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32279 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | || || | || | | | |||||||| ||| | | |||||||| | || || Sbjct 32280 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32339 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 32340 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 32399 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 ||||||| || |||||||||||||| |||||||||| || || || ||| Sbjct 32400 TCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 32459 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || || || || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 32460 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 32519 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| || || || |||| || | || | ||||| || |||||| Sbjct 32520 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCAT 32579 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || || | || || || | ||||| || |||| | Sbjct 32580 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 32622 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 32623 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 32678 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || |||||||| || ||||| ||||||| || || ||| | | ||| Sbjct 32679 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 32738 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 32739 CATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 32798 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 |||||||| | ||||| | || || || || || || || || || | ||||| ||| Sbjct 32799 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 32858 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || ||||||||||| ||||| ||||| ||| | || |||||||| | || Sbjct 32859 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCT 32918 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || ||||| Sbjct 32919 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 32978 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 32979 CGTGGAAACGCTCTTTAA 32996 >seq3 Length=29132933 Score = 159 bits (176), Expect = 4e-34 Identities = 375/561 (67%), Gaps = 10/561 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||| | || || | ||||||||| ||| || || ||||| || |||| ||||||||| Sbjct 2931744 TTTGGTATTATTAATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 2931803 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | || | || ||||||||| ||| || || || Sbjct 2931804 CTATTGCTCTTTCCTTGTGCCTATTTCTCTTTGGGGGGTTGGTTCACAGGTACAACTTTT 2931863 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | ||| || ||| | || || || | | || Sbjct 2931864 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAGTCTTTTA 2931923 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCT--GTTCCT-TTG- 170764 || | |||||||| || |||| ||| | | | | |||| ||| | ||| Sbjct 2931924 ACCGATGCAGTTTCTACTCCTGCT-----AATAGTTTAACGCATTCTTTGTTATTATTGT 2931978 Query 170765 GGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTT 170824 ||| |||||||||||||| ||| |||||||| ||| | | ||| | ||| || Sbjct 2931979 GGGTCCTGAAGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAGACGGTCTGTGGGGTTT 2932038 Query 170825 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGC 170884 ||| || | || | | || | | | ||| |||| ||| | | |||||||| | || Sbjct 2932039 TGTTGCTCTCCACAGTGCTTTCGAATTAATAAGTTTTATGTTACGTCAATTTGAACTTGC 2932098 Query 170885 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 170944 || ||| | ||||||| || ||| | ||||||||| | || || || || Sbjct 2932099 TCGATCTGTTCAATTGCGACCTTATAATGCAATAACATTCTCTGGTCCAATTGCTGTTTT 2932158 Query 170945 CACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATT 171004 | | ||||||| || ||||| | |||||| |||||||||| ||||| || Sbjct 2932159 TATTTCTGTCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTT 2932217 Query 171005 CGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATT 171064 ||||| || || || ||||| | ||| | || | ||||| || || || | ||| Sbjct 2932218 TGGTGTAGCGGCTATATTTCGGTTCATCATCTTTTTCCAAGGGTTTCATAATTGGAAATT 2932277 Query 171065 GAATCCATTTCACATGATGGG 171085 ||| || |||| |||||||| Sbjct 2932278 GAACCCTCTTCATATGATGGG 2932298 >seq3905 Length=4339 Score = 118 bits (130), Expect = 1e-21 Identities = 211/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 170853 ATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAAC 170912 |||||||| ||| | | |||||||| | || || ||| | ||||||| || Sbjct 1195 ATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAAT 1254 Query 170913 GCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTA 170972 ||| ||||||||| || | || || || || | ||||||| || ||||||||| Sbjct 1255 GCAATCGCATTCTTTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTA 1314 Query 170973 GGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATC 171032 ||||| |||||||||| || || || ||||| || | || ||||| | ||| Sbjct 1315 GGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATC 1374 Query 171033 TTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCA 171092 | || | ||||| || || || | |||||| |||||||| |||||||| || || Sbjct 1375 CTCTTTTTCCAAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCT 1434 Query 171093 GGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTG 171152 || |||| || | || | ||||| || ||||||||||| || || | || || || Sbjct 1435 GGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 1494 Query 171153 TATGAAGA 171160 | |||||| Sbjct 1495 TTTGAAGA 1502 >seq2 Length=43799612 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| |||| ||||| || || |||||||||||||| || || || || | Sbjct 40939157 CAGAGGTTTGGTGTTCCGATGGGTTACGGTGGTCCTCATGCTGCGTTTTTGGCTACTTCG 40939098 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| ||| ||||| || ||| | | |||||| || ||| | | Sbjct 40939097 GGAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTCAGT--GTTGATTCTACTG 40939040 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || ||| | | || | |||||||| || |||||||| ||||| || |||| Sbjct 40939039 GGAAGCCAGCTCTGCGTATGGCTATGCAGACTAGGGAACAGCATATTAGGAGGGATAAAG 40938980 Query 153946 CAACCAGTAACATCTGCACAGCTCA 153970 | || || |||||||| || ||||| Sbjct 40938979 CCACTAGCAACATCTGTACTGCTCA 40938955 Score = 82.4 bits (90), Expect = 9e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501 |||| |||||||||||| | ||||| | |||| | || | || | ||| || Sbjct 8463553 TTGGATGGTTTGGTGTTTTGATGATCCTTATCTTATTGACCGTAGTTTCTGTTTTTATTA 8463612 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 | ||||||||||| | ||||| || ||| | || || || | ||||| | | | | Sbjct 8463613 TCGCATTCATTGCTGTTCCTCCAGTAGATTTTGATGGTATTTGTGAACCTATTTCTCGAT 8463672 Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 || ||||| ||||| ||| | || || || ||||| || ||| | || ||||| Sbjct 8463673 CTCTTCTT-TATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTGCAGCTATT 8463731 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAAT 169677 || | || || || ||| ||||||||| ||| ||||||||||||| | || ||| Sbjct 8463732 GGTTTGCATTTTTATTCAAACTGGGAAGCTGCATTTGTTGATGAATGGCTATACAAT 8463788 >seq813 Length=20179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 170335 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAG 170394 |||||||||||||||||| | ||||| ||||||||||| ||||||||||| ||| |||| Sbjct 10706 ATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 10647 Query 170395 TCTACA 170400 ||| || Sbjct 10646 TCTCCA 10641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579135504051840