Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq10676 659 0.0 seq3905 262 4e-65 seq3 242 4e-59 seq3442 100 3e-16 seq2 89.7 6e-13 >seq10676 Length=153368 Score = 659 bits (730), Expect = 0.0 Identities = 729/969 (75%), Gaps = 2/969 (0%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || |||| ||||| || ||| ||||||| ||||| || ||| | ||||| Sbjct 1299 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTAC-CTTATTGACCGCAAC 1241 Query 163871 CATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 | ||| || |||| ||| | |||||||| || || || || |||||||||||||| Sbjct 1240 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1181 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 ||||||| | || || || | || || ||||| || || || ||||| || |||| | Sbjct 1180 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 1121 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || |||||| | || || || || || |||||||| |||||| |||||||||| Sbjct 1120 TTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATG 1061 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGC 164110 ||| |||||||||||||||| |||| | || | ||||| | | ||| | | Sbjct 1060 GCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 1001 Query 164111 ATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGT 164170 || |||||||||||||||||||| || |||||| |||||||||||||||||| ||| Sbjct 1000 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 941 Query 164171 TGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230 ||| || || || || |||||||| || | || || ||| || |||| || | ||||| Sbjct 940 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 881 Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290 ||| || ||||| | ||||| || || |||||||| || ||||||| ||| | || Sbjct 880 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 821 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350 ||||| || ||||||||||| || |||||||| || || ||| | || || ||||| || Sbjct 820 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 761 Query 164351 ATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 164410 ||| ||||| || || || ||||| ||||| |||||| |||| |||||| || | | Sbjct 760 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAG 701 Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470 |||||||| |||| ||| || || | || |||| || ||||||||||||||||| Sbjct 700 GGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAAGAAAC 641 Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530 ||||||||||| || ||||||||||| ||||| || ||||||||||||| ||| || Sbjct 640 TTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 581 Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590 |||||| || ||||| || || |||||| | || || ||||| || || || || ||||| Sbjct 580 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 521 Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650 || || | ||| || || ||||| |||||||| || |||||||| |||||||| || Sbjct 520 TACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 461 Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710 | | ||| |||| || ||||| | || |||||||| || || | ||||| ||| Sbjct 460 AGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 401 Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770 || ||||||||||||||||| || ||||| ||||||||||||||||| || || ||||| Sbjct 400 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 341 Query 164771 TGCTGAGTc 164779 || |||||| Sbjct 340 TGTTGAGTC 332 Score = 587 bits (650), Expect = 8e-163 Identities = 733/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || || ||||||||||| ||||||||||| || | || ||| Sbjct 31992 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32051 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | ||| | || |||||| | || || || || || | || ||| Sbjct 32052 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32111 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385 |||||||| || ||||| ||||||||| | || ||| || ||| | || || |||||| Sbjct 32112 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 32171 Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445 |||||||| || | | | | |||||| | || | || ||||||||||| || ||| Sbjct 32172 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32231 Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505 || ||||| | ||| ||| | || || || ||||||||||| || |||||||| Sbjct 32232 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 32291 Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTAT 165564 |||||||| |||| ||||| ||| | ||||| |||||| | || || ||| || | | Sbjct 32292 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 32350 Query 165565 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 165624 || || || ||||| || || ||||||||||| || |||||||||||| |||||||| Sbjct 32351 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 32410 Query 165625 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684 || || || || |||||||| ||||||| || || || ||| || || || || || Sbjct 32411 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 32470 Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744 || | ||| | ||||| | ||||| || ||||| ||||| ||||| || |||||||| Sbjct 32471 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 32530 Query 165745 GATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGT 165804 |||||| || || ||| | ||||| | || || | | || || ||||||| ||| || Sbjct 32531 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 32590 Query 165805 AGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTAC 165864 ||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | || Sbjct 32591 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 32650 Query 165865 TCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGG 165924 ||||| |||||||| || |||||||| || || ||||| || ||||| || ||||| || Sbjct 32651 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 32710 Query 165925 TATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 165984 |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 32711 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 32770 Query 165985 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 166044 | | |||| ||| | | || | | ||||| ||| | ||||| ||||| |||||||| Sbjct 32771 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 32830 Query 166045 TGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAA 166104 || ||||| || ||| | ||||| ||||| || || ||||| || ||||| || ||||| Sbjct 32831 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 32890 Query 166105 CATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAA 166164 ||||| || || |||||| |||| |||||| |||| | ||||| || ||||| || Sbjct 32891 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 32950 Query 166165 CTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | || | |||||||| || ||||| || | || ||||| || Sbjct 32951 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32992 >seq3905 Length=4339 Score = 262 bits (290), Expect = 4e-65 Identities = 308/414 (74%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 165479 CTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAG 165538 || ||||||||||| || |||||||| |||||||| |||| ||||| ||| | ||||| Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 165539 TTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 165597 |||||| | || || ||| || | | || || || ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 165598 TATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTT 165657 || |||||||||||| |||||||| || || || || |||||||| ||||||| || Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 165658 CGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCA 165717 || || ||| || || || | || || | ||| | ||||| | ||||| || || Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 165718 TAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATT 165777 ||| |||| ||||| || |||||||||||||| || || ||| | ||||| | || | Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 165778 GCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGC 165837 | | | || || ||||||| ||| ||||| |||||| | | | |||||||||| | ||| Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 165838 AAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGT 165891 |||||| ||| || ||| || ||||||| |||||||| || |||||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGT 1568 >seq3 Length=29132933 Score = 242 bits (268), Expect = 4e-59 Identities = 378/530 (71%), Gaps = 8/530 (2%) Strand=Plus/Plus Query 165224 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 165283 || || || |||||||| ||||||||||| || | || ||||| ||| ||| | || Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 165284 ATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCA 165343 | || |||||| | || || || ||||| | || ||||||||||| || ||||| Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 165344 AGTTCCTATCT-GGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGC 165402 ||||||||| | | ||| |||| |||| | || | |||||||||||||| || | Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAATAG 2931952 Query 165403 TATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGT 165461 | | |||||| || | || | ||||||||| || ||||| || ||| ||| | | Sbjct 2931953 TTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTC-GTT 2932010 Query 165462 GGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTG 165521 || ||| | | || || |||| |||||| || |||||| | ||||||| |||| Sbjct 2932011 GGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAA 2932070 Query 165522 GTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCT 165580 |||| ||| | ||||| |||||| | || || ||| || | | || || || ||||| Sbjct 2932071 GTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCA 2932129 Query 165581 ATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGT 165640 || | ||||||||||| || ||||||||| || |||||||| || || |||| ||| Sbjct 2932130 ATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGT 2932188 Query 165641 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTC 165700 ||||| ||||||| || || || ||| || || || || || || ||||| | || Sbjct 2932189 CAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATC 2932248 Query 165701 TTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGG 165750 || | ||||| || ||||| |||| ||||| || ||||||||||||| Sbjct 2932249 TTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq3442 Length=4740 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 164455 GTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCT 164514 |||||||| ||||||| ||||||||||| || ||||||||||| ||||| || |||||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 164515 TCCAATACGCTTCATTCAACAACTCCCGTT 164544 ||||||| ||| |||||||| || |||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCTCGTT 4366 >seq2 Length=43799612 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 163825 TTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACCATCTGTTTC-ATC 163883 |||| ||||| || ||| ||||||||| || || ||| | ||||||| || Sbjct 8463553 TTGGATGGTTTGGTGTTTTGATGATCCTTAT-CTTATTGACCGTAGTTTCTGTTTTTATT 8463611 Query 163884 GTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGT 163943 |||| ||| | |||| ||| || || || | ||||||||| |||||||| || | | Sbjct 8463612 ATCGCATTCATTGCTGTTCCTCCAGTAGATTTTGATGGTATTTGTGAACCTATTTCTCGA 8463671 Query 163944 TCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATT 164003 || || | ||||| ||| | || || || ||||| || ||| | || || ||| Sbjct 8463672 TCTCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTGCAGCTATT 8463731 Query 164004 GGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAA 164059 ||| | || || || | | |||||||| |||| ||||||||||||| ||||| Sbjct 8463732 GGTTTGCATTTTTATTCAAACTGGGAAGCTGCATTTGTTGATGAATGGCTATACAA 8463787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556850478385440