Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq10676 520 1e-142 seq3 152 6e-32 seq3905 114 2e-20 seq2 102 1e-16 >seq10676 Length=153368 Score = 520 bits (576), Expect = 1e-142 Identities = 717/1000 (72%), Gaps = 2/1000 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| |||| ||| | ||| | |||| |||| ||||| ||||| | Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 ||||| || || | || ||| | | || || | ||||||||||| || ||| Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1207 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998 || || ||||| || || || | ||||| ||| | || ||| ||||| || || ||||| Sbjct 1206 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACAA 1148 Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058 || || || ||||| || |||| | || || || ||| | || || || || || Sbjct 1147 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGAT 1088 Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118 ||||||||| ||| |||| ||||||||| | ||||| |||||||||||| | | | | Sbjct 1087 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1028 Query 172119 CTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178 | ||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 1027 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 968 Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || ||| Sbjct 967 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 908 Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298 ||| ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 907 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 848 Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358 ||| ||||| |||||||||||| | || ||||| || ||||| |||||||| ||||| || Sbjct 847 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 788 Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418 || |||||| ||| ||||| || | || || || || |||| || ||||| || Sbjct 787 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 728 Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478 |||||| || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 727 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 668 Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538 |||| ||||| |||||||||||||| |||||||| ||||| || |||||||| ||||| Sbjct 667 GTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 608 Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 || | |||||||| |||||| ||||||||| || | | | || |||||| |||| Sbjct 607 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 548 Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658 | || || || ||| || | ||||| || || | ||||| |||| ||||| ||||| Sbjct 547 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 488 Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718 ||| || |||||||| |||||||||||||| || ||| | | || || || ||| Sbjct 487 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 428 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| ||| || ||||| | || ||||| ||||||||||||||||||||| | ||||| Sbjct 427 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 368 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTCA 172818 ||||||||||| ||||||| ||| ||| |||||| || Sbjct 367 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTCTCCA 328 Score = 372 bits (412), Expect = 4e-98 Identities = 703/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || || ||||| || | || ||||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || ||||||||| ||| || ||||| Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || |||||| Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32159 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || ||||| || || |||| | | | ||| | | |||| || ||||| Sbjct 32160 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32219 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 |||||||||||||| || ||||||| ||| | || || || ||| ||||| Sbjct 32220 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32279 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || || | || | | | |||||||| ||| | ||||| ||||| | || || Sbjct 32280 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32339 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 32340 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 32399 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 ||||| |||| || |||||||| || |||||||||| || ||| || ||| Sbjct 32400 TCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 32459 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || || || || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 32460 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 32519 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| || || || |||| || | || | |||| || |||||| Sbjct 32520 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCAT 32579 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | ||||| || ||| ||| Sbjct 32580 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT------ 32621 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 32622 ---GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 32678 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || |||||||| || ||||| | || ||||| || ||| | | ||| Sbjct 32679 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 32738 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 32739 CATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 32798 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||||| || | ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 32799 GGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 32858 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || ||||||||||| ||||| ||||| ||| | || |||||||| | || Sbjct 32859 GATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCT 32918 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || ||||| Sbjct 32919 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 32978 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 32979 CGTGGAAACGCTCTTTAA 32996 >seq3 Length=29132933 Score = 152 bits (168), Expect = 6e-32 Identities = 379/565 (67%), Gaps = 18/565 (3%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||| | || || | ||||||||| ||| || || || || || | || ||||||||| Sbjct 2931744 TTTGGTATTATTAATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGT 2931803 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | ||| | || ||||||||| ||| || || || Sbjct 2931804 CTATTGCTCTTTCCTTGTGCCTATTTCTCTTTGGGGGGTTGGTTCACAGGTACAACTTTT 2931863 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGA-GCAAACTTTTT 173129 || || ||||||||||| ||||| | || ||| ||| | ||||| ||| ||||| Sbjct 2931864 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAGTCTTTT- 2931922 Query 173130 AACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCT--GTTCCT-TTG 173186 ||| | ||||| || || |||| ||| | | | | |||| ||| | ||| Sbjct 2931923 AACCGATGCAGTTTCTACTCCTGCT-----AATAGTTTAACGCATTCTTTGTTATTATTG 2931977 Query 173187 -GGGACCTGAAGCACAAGG---TTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGA 173242 ||| |||||||||||||| || || || ||||||| ||| | | || || ||| Sbjct 2931978 TGGGTCCTGAAGCACAAGGAGATT--TTAGT-CGTTGGTGTCAATTAGACGGTCTGTGGG 2932034 Query 173243 ACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGA 173302 ||||| || | || | | || | | | ||| |||| ||| | ||||| ||||| Sbjct 2932035 GTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAGTTTTATGTTACGTCAATTTGAAC 2932094 Query 173303 TCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAG 173362 | || || ||| | ||||||| || ||| | ||||||||| | || || | Sbjct 2932095 TTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATAACATTCTCTGGTCCAATTGCTG 2932154 Query 173363 TCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTT 173422 | || | | ||||| |||| || || | ||| || |||||||||| |||||| Sbjct 2932155 TTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTA 2932213 Query 173423 CATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTA 173482 || ||||| || || || ||||| | ||| | || | ||||| || || || | Sbjct 2932214 GTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCTTTTTCCAAGGGTTTCATAATTGGA 2932273 Query 173483 CATTGAATCCATTTCACATGATGGG 173507 |||||| || |||| |||||||| Sbjct 2932274 AATTGAACCCTCTTCATATGATGGG 2932298 >seq3905 Length=4339 Score = 114 bits (126), Expect = 2e-20 Identities = 210/308 (68%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 173275 ATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAAC 173334 |||||||| ||| | ||||| ||||| | || || ||| | ||||||| || Sbjct 1195 ATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAAT 1254 Query 173335 GCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTA 173394 ||| ||||||||| || | || || || || | ||||| |||| || |||||| Sbjct 1255 GCAATCGCATTCTTTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTA 1314 Query 173395 GGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATC 173454 || || |||||||||| || ||| || ||||| || | || ||||| | ||| Sbjct 1315 GGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATC 1374 Query 173455 TTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCA 173514 | || | ||||| || || || | |||||| |||||||| |||||||| || || Sbjct 1375 CTCTTTTTCCAAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCT 1434 Query 173515 GGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTG 173574 || |||| || | || | |||| || ||||||||||| || || | || || || Sbjct 1435 GGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 1494 Query 173575 TATGAAGA 173582 | |||||| Sbjct 1495 TTTGAAGA 1502 >seq2 Length=43799612 Score = 102 bits (112), Expect = 1e-16 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || ||||||||| |||| ||||| ||||| |||||||||||||| || || || || | Sbjct 40939157 CAGAGGTTTGGTGTTCCGATGGGTTACGGTGGTCCTCATGCTGCGTTTTTGGCTACTTCG 40939098 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| ||||| || ||| | | |||||| || ||| | Sbjct 40939097 GGAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTCAGT--GTTGATTCTACTG 40939040 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || ||| | | || | |||||||| || |||||||| || || || |||| Sbjct 40939039 GGAAGCCAGCTCTGCGTATGGCTATGCAGACTAGGGAACAGCATATTAGGAGGGATAAAG 40938980 Query 158621 CAACCAGTAACATCTGCACAGCACAAG 158647 | || || |||||||| || || |||| Sbjct 40938979 CCACTAGCAACATCTGTACTGCTCAAG 40938953 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 40937282 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 40937223 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCATTT 159801 || ||||| | ||||| |||||||| || ||| | |||||||| Sbjct 40937222 TGGGCCTGGAATGGGTCCCATTGGTGTGAAGAAGCATTTAGCACCATTT 40937174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587972724567360