Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq10676 590 7e-164 seq3905 250 3e-61 seq3 232 7e-56 seq3442 82.4 9e-11 seq722 82.4 9e-11 >seq10676 Length=153368 Score = 590 bits (654), Expect = 7e-164 Identities = 730/996 (73%), Gaps = 2/996 (0%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 ||||| | ||| ||||| ||| | ||||| || || | || ||||| || || || Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 162504 |||||||| || | ||| | ||||| | ||| || |||| ||| | |||||||| Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1207 Query 162505 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 162564 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1206 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1147 Query 162565 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 162624 || || || ||||| || |||| |||| || |||||| | || || ||||| ||| Sbjct 1146 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 1087 Query 162625 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTA 162684 |||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | || Sbjct 1086 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1027 Query 162685 TTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGT 162744 | ||||| | | || | | || ||||| ||||| |||||||| || |||| Sbjct 1026 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 967 Query 162745 CTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGGC 162803 || ||||||||||| ||||| ||| || ||||| || || ||||||||||| || | || Sbjct 966 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 908 Query 162804 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 162863 || ||| || |||| || | |||||||| ||| ||||| | ||||| | || || Sbjct 907 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 848 Query 162864 CAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCC 162923 | |||||| ||||||| ||| |||| ||||| || |||||||||||||| ||||| || Sbjct 847 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 788 Query 162924 CTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGG 162983 || |||||||| ||||| || ||||| ||||| || || || || ||||| ||||| || Sbjct 787 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 728 Query 162984 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 163043 ||||||||| || ||| | || | || || || |||| ||| || || | || Sbjct 727 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 668 Query 163044 TTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGG 163103 |||| ||||||||||||||||| || |||||||| || || || || ||||| || || Sbjct 667 GTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 608 Query 163104 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 163163 || ||||||||||||||||| |||||||| || ||||| || || |||||| | || Sbjct 607 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 548 Query 163164 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 163223 || ||||| || || || || ||||| || || | || | || ||||| ||||| Sbjct 547 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 488 Query 163224 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 163283 ||| || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 487 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 428 Query 163284 CTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGC 163343 ||||| || || | |||||||| | ||||||||||||||||| || || ||||| Sbjct 427 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 368 Query 163344 TCACAACTTCCCACTTGACCTGGCAGCTGCCGAGTC 163379 |||||||||||| || ||||| || |||| ||||| Sbjct 367 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 511 bits (566), Expect = 5e-140 Identities = 731/1022 (72%), Gaps = 8/1022 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || |||||||| || Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| | Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32159 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || || || || |||||| | | | | |||||| || || || || ||||| Sbjct 32160 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGGG 32218 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||| || || || ||||| || ||| ||| | || || || ||| |||||| Sbjct 32219 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGT 32278 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || |||||||| || || || | || ||||| ||| | || ||||||||||||||||| Sbjct 32279 TGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 32338 Query 163980 -CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | |||| || ||||| || || ||||||||||| |||||||| || | Sbjct 32339 ATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 32397 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || ||||||||| || || || || |||||||| |||||||||| || || ||||| Sbjct 32398 TTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 32457 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || || || || || ||||| || | || | ||||| |||||||| ||||| |||| Sbjct 32458 GTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 32517 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 |||| || |||||||||||||| |||||| |||| |||| || || ||| ||||||| Sbjct 32518 ACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTC 32577 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | || | || || |||||||| || | ||||||||| || ||||| || || | Sbjct 32578 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 32637 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 32638 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 32697 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||| Sbjct 32698 CACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 32757 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| |||||| || |||| | | || || ||| | || || | Sbjct 32758 TACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTAC 32817 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 |||| || || || || || || || | ||||| |||||||| || || ||||||| Sbjct 32818 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTT 32877 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 ||||||| || || || | || |||||||| | || || ||| | || | || | Sbjct 32878 TCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATC 32937 Query 164579 AGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTA 164636 ||| || || ||| || | ||||| || || || || || | || || || ||||| Sbjct 32938 AGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 32995 Query 164637 AT 164638 || Sbjct 32996 AT 32997 >seq3905 Length=4339 Score = 250 bits (276), Expect = 3e-61 Identities = 306/415 (74%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 163906 CTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAA 163965 || ||| |||||| || |||||||| || || || | || ||||| ||| | || ||| Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 163966 TTTGAACTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCC 164024 |||||||||||||| ||| || | | |||| || ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 164025 TATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTT 164084 |||||||| || ||| ||||||||| || || || || |||||||| |||||||||| Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 164085 CGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCA 164144 || || |||||| || || | || || ||||| || | || | ||||| ||||| Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 164145 TAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATT 164204 ||| |||| |||||||| || |||||||||||||| |||||| |||| |||| || | Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 164205 GCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGC 164264 | ||| |||||||| || | || || |||||||| || | ||||||||| || || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 164265 AAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTC 164319 ||| || || || ||| | || || | ||||| |||||||| |||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 232 bits (256), Expect = 7e-56 Identities = 382/546 (70%), Gaps = 4/546 (1%) Strand=Plus/Plus Query 163634 ATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTCTTC 163693 |||||||| | | | || || || || ||| | ||||||||||| || | || ||| Sbjct 2931757 ATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTC 2931816 Query 163694 CCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGTGGT 163753 | ||| ||| | | | || || ||| | || ||||||||||| || || || |||| Sbjct 2931817 CTTGTGCCTATTTCTCTTTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGT 2931876 Query 163754 ACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTCACAGCGGCTGTGT 163813 | || |||||| |||| | ||||||| | || ||| | | || | || | || || | Sbjct 2931877 ATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTT 2931936 Query 163814 CAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAGG 163873 | || |||||| | | | |||||| || || || | ||||||||| || || | Sbjct 2931937 CTACTCCTGCTAATAGTTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAG 2931995 Query 163874 GCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAG 163933 | ||||| || ||| ||| | | || || ||| |||||| || |||||| | | Sbjct 2931996 GAGATTTTAGTCGTTGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTG 2932055 Query 163934 CCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG-CCTGATTGGAATC 163992 | || | | || |||| ||| | || ||||||||||||||||| ||| || | | Sbjct 2932056 CTTTCGAATTAATAAGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTG 2932114 Query 163993 AGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTC 164052 |||| || ||||| || | ||||||||||| |||||||| || || ||||||||| Sbjct 2932115 CGACCTTATAATGCAATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTA 2932174 Query 164053 ATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATC 164112 || || |||| |||||||| |||||||||| || || |||||| || || || || Sbjct 2932175 ATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATA 2932233 Query 164113 TTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATG 164172 || | ||| || | || | ||||| |||||||| |||| |||||||| | |||||| Sbjct 2932234 TTTCGGTTCATCATCTTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATG 2932293 Query 164173 ATGGGA 164178 |||||| Sbjct 2932294 ATGGGA 2932299 >seq3442 Length=4740 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 163055 GTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCT 163114 |||||||| |||| || |||||||| || || || || ||||| || || || ||||||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 163115 TCCAATATGCATCATTCAACAACTCCCGTT 163144 |||||||||| |||||||| || |||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCTCGTT 4366 >seq722 Length=22714 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 164022 TCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTT 164081 ||| |||||||| || ||| ||||||||| || || || || |||||| ||||||| Sbjct 7562 TCCAATTGCTGTTTTTGTT--TGTCTTTCTAATTTATCCACTATGTCAATGTGGTTGGTT 7505 Query 164082 CTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATT 164141 ||| | || ||||| || | || || || ||||| | | || ||||| | || Sbjct 7504 CTTTACGCCTAGTTTTGATGTAGTGGCTATATTTCGATTCATTCTCTTT-TTCAAAGGTT 7446 Query 164142 TCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGT 164180 |||||| ||||| ||||| | | |||||||||||||| Sbjct 7445 TCATAATTGGACATTGAAACTAATTCATATGATGGGAGT 7407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557509590415200