Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq10676 601 4e-167 seq3905 257 2e-63 seq3 255 7e-63 seq813 89.7 6e-13 seq722 84.2 2e-11 >seq10676 Length=153368 Score = 601 bits (666), Expect = 4e-167 Identities = 736/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| || ||||||||||| ||||||||||| || | || ||| Sbjct 31992 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32051 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | ||| | || |||||| | || || || | || || || ||| Sbjct 32052 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32111 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 |||||||| || ||||| ||||||||| | || || || ||| | || || |||||| Sbjct 32112 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 32171 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 |||||| || || | | | |||||| | || | || ||||||||||| |||||| Sbjct 32172 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32231 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||| | || || || ||||||||||| || |||||||| Sbjct 32232 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 32291 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853 |||||||| |||| ||||| ||| | ||||| |||||||| || || ||| || | | Sbjct 32292 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 32350 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || || || ||||| || || ||||||||||| || |||||||||||| |||||||| Sbjct 32351 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 32410 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 || || || || |||||||| ||||||| || || || ||| || || | || || Sbjct 32411 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 32470 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 || |||||| | ||||| | ||||| || ||||| |||||| |||| ||||||||||| Sbjct 32471 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 32530 Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093 |||||| || || ||| | |||| | || || | | || |||||||||| ||| || Sbjct 32531 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 32590 Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153 ||| |||||| | | | |||||||||| |||||||| ||| || ||| || || Sbjct 32591 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 32650 Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213 ||| | || || || ||||||||||| || || ||||| || ||||| || |||||||| Sbjct 32651 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 32710 Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273 |||| || ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 32711 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 32770 Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333 | | |||| ||| | | || | | ||||| ||| | ||||| ||||| |||||||| Sbjct 32771 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 32830 Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393 |||||||| || ||| | ||||| |||||||| || |||||||| ||||| || || || Sbjct 32831 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 32890 Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453 || || || ||||||||| |||| || ||| | || || ||||| |||||||| || Sbjct 32891 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 32950 Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 | || | ||||||||||| || || || || || || || || Sbjct 32951 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32992 Score = 600 bits (664), Expect = 1e-166 Identities = 719/986 (73%), Gaps = 0/986 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | || || ||| | |||||||| || | || ||||| || ||| ||||||| ||| Sbjct 1317 TGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCT 1258 Query 167157 ACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGAC 167216 || || | | ||||| | ||| || ||||| ||| | | ||||||||| || || Sbjct 1257 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 1198 Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276 || |||||||| || ||||| ||| |||| || || | || || ||||| || || || Sbjct 1197 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCA 1138 Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336 ||||| || ||||| ||||| ||||||||| | || || ||||| ||||||||||| Sbjct 1137 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCT 1078 Query 167337 GCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396 ||| || | || || ||| | ||||| |||||||||| |||| | ||| | ||||| Sbjct 1077 GCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTT 1018 Query 167397 CTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATG 167456 | |||| | | ||||||||||||||||||||||| || |||||| |||||| Sbjct 1017 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 958 Query 167457 CGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTC 167516 ||||| ||||| ||||||||| || ||||| || || || || ||||||| ||| | Sbjct 957 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 898 Query 167517 GTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACA 167576 |||| || | |||||||| ||| ||||| | |||||||| || ||||||||||| Sbjct 897 ATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 838 Query 167577 TTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATG 167636 ||||||| ||| |||| ||||| || ||||||||||| || |||||||| || || ||| Sbjct 837 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 778 Query 167637 CTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTT 167696 | || || ||||| ||||||||||| || || || ||||| ||||| |||||| |||| Sbjct 777 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTA 718 Query 167697 ACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTC 167756 || ||| || | | |||||||| |||| ||| || || | || |||| ||| Sbjct 717 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTC 658 Query 167757 GGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATC 167816 ||||| |||||||| || || ||||| || |||||||| ||||| || || || ||||| Sbjct 657 GGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATC 598 Query 167817 TTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCT 167876 |||||||| || |||||||| || || || | || |||||||| || || ||||| Sbjct 597 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 538 Query 167877 GTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGT 167936 || || ||||| |||| |||||||| || ||| Sbjct 537 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGT 478 Query 167937 TTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGAC 167996 ||||| |||||||| || | |||||||| || ||| | ||||||||| || Sbjct 477 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 418 Query 167997 GTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 168056 | | ||||||||| || ||||||||||||||||| || |||||||||||||||||| Sbjct 417 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 358 Query 168057 CCTCTCGACCTTGCTGCTGCTGAGTC 168082 ||||| ||||| ||||||| |||||| Sbjct 357 CCTCTAGACCTAGCTGCTGTTGAGTC 332 >seq3905 Length=4339 Score = 257 bits (284), Expect = 2e-63 Identities = 307/414 (74%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 168768 CTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAG 168827 || ||||||||||| || |||||||| |||||||| |||| ||||| ||| | ||||| Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 168828 TTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCC 168886 |||||||| || || ||| || | | || || || ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 168887 TATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTT 168946 || |||||||||||| |||||||| || || || || |||||||| ||||||| || Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 168947 CGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCA 169006 || || ||| || || | | || || |||||| | ||||| | ||||| || || Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 169007 TAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTT 169066 ||| |||| | |||| ||||||||||||||||| || || ||| | |||| | || | Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 169067 GCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGC 169126 | | | || |||||||||| ||| ||||| |||||| | | | |||||||||| || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 169127 AAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGT 169180 |||||| ||| || ||| || ||||| | || || || ||||||||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGT 1568 >seq3 Length=29132933 Score = 255 bits (282), Expect = 7e-63 Identities = 382/532 (72%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 168511 GGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTG 168570 |||| || || |||||||| ||||||||||| || | || ||||| ||| ||| | Sbjct 2931772 GGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCT 2931831 Query 168571 CTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGG 168630 || | || |||||| | || || || |||| || || ||||||||||| || |||| Sbjct 2931832 CTTTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGG 2931891 Query 168631 CAAGTTCCTATCT-GGAGGGCGCAAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGAT 168689 | ||||||||| | | ||| ||| |||| | || | |||||| |||||| || || Sbjct 2931892 CTAGTTCCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAAT 2931950 Query 168690 TCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGA-TTTCGTCAG 168748 | | |||||| || | || | ||||||||| |||||||| || ||| ||| | Sbjct 2931951 AGTTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTC-G 2932008 Query 168749 ATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAAT 168808 ||||||||| | | || || |||| |||||| || |||||| | ||||||| |||| Sbjct 2932009 TTGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAAT 2932068 Query 168809 CGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATG 168867 |||| ||| | ||||| |||||||| || || ||| || | | || || || |||| Sbjct 2932069 AAGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATG 2932127 Query 168868 CTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGG 168927 | || | ||||||||||| || ||||||||| || |||||||| || || |||| | Sbjct 2932128 CAATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AG 2932186 Query 168928 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTC 168987 ||||||| ||||||| || || || ||| || || | || || || || ||| | Sbjct 2932187 GTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCA 2932246 Query 168988 TCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGG 169039 |||| | ||||| || ||||| |||| | |||| || ||||||||||||| Sbjct 2932247 TCTTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq813 Length=20179 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 168021 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 168080 |||||||||||||| || ||||||||||||||||||||||| ||||| ||||||| |||| Sbjct 10706 ATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 10647 Query 168081 TC 168082 || Sbjct 10646 TC 10645 >seq722 Length=22714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 168884 TCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTT 168943 ||| || |||||||||||| | ||||||| || || || || |||||| ||||||| Sbjct 7562 TCCAATTGCTGTTTTTGTTTG--TCTTTCTAATTTATCCACTATGTCAATGTGGTTGGTT 7505 Query 168944 TTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATT 169003 || | || ||| | || || || || |||||| ||||||| | |||| || Sbjct 7504 CTTTACGCCTAGTTTTGATGTAGTGGCTATATTTCGATTCATTCTCTTTTTCAAAGGTTT 7445 Query 169004 CCATAACTGGACACTGAATCCATTTCATATGATGGGTGTA 169043 | |||| |||||| |||| | | ||||||||||||| ||| Sbjct 7444 C-ATAATTGGACATTGAAACTAATTCATATGATGGGAGTA 7406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560533186862400