Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq10676 529 3e-145 >seq10676 Length=153368 Score = 529 bits (586), Expect = 3e-145 Identities = 717/998 (72%), Gaps = 6/998 (1%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || ||| | ||| | ||| |||||| || ||| | ||| |||| ||||||||||| | Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 215354 ATGATTCCTTGCCTCCT---CGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCA 215410 ||||||||| | | | |||| || || || | | |||| ||||||| ||||| Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCT 1210 Query 215411 CCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAAC 215470 ||||| || ||||| || || || | || || ||| |||| ||| | | || || ||| Sbjct 1209 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 1150 Query 215471 AACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCT 215530 || || || || ||||| || | |||| ||| || || || || || || || || Sbjct 1149 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCG 1090 Query 215531 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTT 215590 ||||||||||| ||| | ||||| |||||||| ||||| ||||| |||| |||| || Sbjct 1089 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1030 Query 215591 ATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTAC 215650 | | ||||| | ||||| | || || || | ||||||||||| || | Sbjct 1029 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 970 Query 215651 AGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTT 215710 | | |||||| | |||||||| |||||| || || || ||||| | ||||| | Sbjct 969 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 910 Query 215711 GCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 || || ||| | | || ||| | ||||| || ||| ||||||| |||||| || ||| Sbjct 909 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 850 Query 215771 ATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 |||||||| || ||||||| ||| |||| ||||||||||||||||||||||| |||||| Sbjct 849 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 790 Query 215831 CCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCAC 215890 ||||| |||||||||||||| |||||||| ||||| || || | || ||| ||||| Sbjct 789 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 730 Query 215891 GGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTAC 215950 ||||| | || || ||| | | ||||| || || || || | |||||| || | Sbjct 729 GGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 670 Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 || |||| ||||| ||||| || ||||| |||||||| |||||||| |||||||| ||| Sbjct 669 GGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 610 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 || || | ||||||||||| || ||||||||| || | | | || |||||| | Sbjct 609 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 550 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 || || | || || | |||| ||| ||||| | ||| | |||||||| ||| Sbjct 549 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 490 Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCT 216190 ||||| || |||||||| |||||||| || || || || || |||||| | Sbjct 489 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 430 Query 216191 ACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAAC 216250 |||||||| || || ||||| | || |||||||||||||| ||||| || ||||| Sbjct 429 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 370 Query 216251 GCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAATC 216288 |||||||||||||| ||||| | ||||||| ||| || Sbjct 369 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744982168860480