Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq10676 616 2e-171 seq3905 255 7e-63 seq3 232 8e-56 seq722 82.4 9e-11 >seq10676 Length=153368 Score = 616 bits (682), Expect = 2e-171 Identities = 721/971 (74%), Gaps = 6/971 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || | || ||||||||||| ||||||| || || | ||| | ||||| Sbjct 1299 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACT 1240 Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940 | ||| || | || ||| | || || ||||| || ||||| || ||||| || ||| Sbjct 1239 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1180 Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000 || || |||| || || | || || ||||| || || || ||||| || | || | Sbjct 1179 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 1120 Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060 || || |||||| | || || || || |||||||||||||| || ||||||| ||| Sbjct 1119 TCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 1060 Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCC 182120 || || ||||||||||||| |||| ||||| | ||||| | | || | || || Sbjct 1059 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--TGTA-GCT 1003 Query 182121 T---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177 | | ||||| ||||||||||||||| || ||| | ||||||||||| ||||| | Sbjct 1002 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 943 Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 || ||||| || ||||| || || || || ||||||| ||||| |||| || | ||| Sbjct 942 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 883 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 ||||| || || |||| ||||| || |||||||| || || ||||||| |||| | Sbjct 882 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 823 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || ||||| ||||||||||||||||||||||| || || |||||||| |||||||| ||| Sbjct 822 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 763 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417 |||||||| || || || |||||||| ||||| ||||||||||| || ||| | || Sbjct 762 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATC 703 Query 182418 CGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 182477 | || || || || | || || || | || |||| ||||||||||||||||| Sbjct 702 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAAGAA 643 Query 182478 ACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCA 182537 || || ||||| || || || || || || || || || |||||||||||||| || Sbjct 642 ACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 583 Query 182538 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGG 182597 |||||||| || ||||| || || |||||| | || || ||||| || || || || ||| Sbjct 582 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 523 Query 182598 TTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 182657 || || || | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 522 TTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 463 Query 182658 TCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCT 182717 || | ||||| |||| || ||||| |||| |||||||| ||| | | ||||||||| Sbjct 462 TCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 403 Query 182718 GGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCT 182777 ||||||||||||||||||||||| ||||| || ||||||||||| ||||| || ||| Sbjct 402 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 343 Query 182778 GCTGCTGAGTC 182788 |||| |||||| Sbjct 342 GCTGTTGAGTC 332 Score = 574 bits (636), Expect = 6e-159 Identities = 735/1010 (73%), Gaps = 6/1010 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || ||||| || ||||| || |||||||| || | || || Sbjct 31992 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32051 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 32052 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32111 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTC 183372 ||||| |||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 32112 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 32171 Query 183373 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAA 183432 || || |||||| | | | | |||||| | ||||||| ||||||||||| | ||| Sbjct 32172 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32231 Query 183433 GGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGT 183492 || || ||| || ||||| ||| | || || || ||| |||||| || ||||||||| Sbjct 32232 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 32291 Query 183493 GCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATC 183552 || || || | || ||||| ||| | || || |||||||||||||| | || | Sbjct 32292 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTG 32351 Query 183553 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTT 183612 || ||||| ||||| || || ||||||||||| |||||||||||||| ||| || || Sbjct 32352 CGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTA 32411 Query 183613 ATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATC 183672 || |||||||| ||||| ||| ||||||||||| |||||||| || ||||| || || Sbjct 32412 ATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATA 32471 Query 183673 TTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCAT 183729 ||| ||| |||| || |||| ||||||| || || ||||| || ||||| || ||| Sbjct 32472 TTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCAT 32528 Query 183730 ATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACA 183789 ||||||||||| |||||| |||| || | || || | | ||||| ||||||| || Sbjct 32529 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 32588 Query 183790 GTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCC 183849 ||||| ||||| || | ||||||||| || ||||| |||||| || ||| | | Sbjct 32589 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 32648 Query 183850 ACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTC 183909 ||||||| ||||| || ||||| ||||| || || || || || |||||||||||||| Sbjct 32649 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 32708 Query 183910 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183969 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 32709 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 32768 Query 183970 GGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 184029 ||| | ||| | | || |||| | | || || ||| | || || ||||| ||||| Sbjct 32769 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 32828 Query 184030 TTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089 || || || || ||| | ||||| |||||||| ||||||||||| ||||| || || Sbjct 32829 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 32888 Query 184090 AACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAG 184149 || || ||| | || ||||| | || || ||| | || || ||||| || ||||| Sbjct 32889 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 32948 Query 184150 AATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 32949 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 32998 >seq3905 Length=4339 Score = 255 bits (282), Expect = 7e-63 Identities = 308/416 (74%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 183466 CTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAG 183525 || ||| |||||| || ||||||||||| || || | || ||||| ||| | || || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 183526 TTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCT 183585 |||||||||||||| | || | || ||||| ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCCA 1275 Query 183586 ATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTT 183645 |||||||||||||| ||| || || || |||||||| ||||| ||| ||||||||| Sbjct 1276 ATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTT 1335 Query 183646 GCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT---TCCTATTGTTCCTTCAGGGTTTC 183702 || |||||||| || ||||| | || ||| ||| |||| || |||| ||||||| Sbjct 1336 GCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT- 1392 Query 183703 CACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCA 183762 || || |||| || ||||| || |||||||||||||| |||||| |||| || | || Sbjct 1393 CATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCT 1452 Query 183763 CTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAA 183822 || | | ||||| ||||||| || ||||| ||||| || | ||||||||| || Sbjct 1453 CTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGT 1512 Query 183823 GCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGT 183878 ||||| |||||| || ||| | ||||||| ||||| || ||||| ||||| Sbjct 1513 GCAAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGT 1568 >seq3 Length=29132933 Score = 232 bits (256), Expect = 8e-56 Identities = 372/529 (70%), Gaps = 4/529 (1%) Strand=Plus/Plus Query 183211 GATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 183270 || |||||||| ||||| || |||||||| || | || |||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 183271 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCT 183330 | || |||||| | || || ||| ||||||| || |||||||| |||||| | ||| Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 183331 TCTTCCTATCTTGAAGGT-GCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 183389 ||||||| | |||||| || |||| | || | || || || || |||||| | Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAATAG 2931952 Query 183390 TATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTG 183449 | | |||||| | | ||| | |||| |||||| | ||||| || ||| || || Sbjct 2931953 TTTAACGCATTCTTTGTTATTATTGTGGG-TCCTGAAGCACAAGGAGATTTTAGTCGTTG 2932011 Query 183450 GTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGG 183509 ||| ||| | | || || ||| |||||| || |||||| |||| || | | || | Sbjct 2932012 GTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAG 2932071 Query 183510 TTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTAT 183569 ||| ||| | || || |||||||||||||| | || | || ||||| ||||| || Sbjct 2932072 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAT 2932131 Query 183570 TGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCA 183629 | ||||||||||| |||||||||||| | ||| || || || ||||| | ||||| Sbjct 2932132 AACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGTCA 2932190 Query 183630 GTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTT 183689 ||| |||||||||||||||||||| || ||||| || || ||| | ||| | | || Sbjct 2932191 ATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCTT 2932250 Query 183690 CCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGA 183738 | || || || || || |||| || ||||| | |||||||||||| Sbjct 2932251 TTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGGA 2932299 >seq722 Length=22714 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 183582 TCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTT 183641 ||| |||||||||||||| ||| || || || |||||||| |||| | | ||||| Sbjct 7562 TCCAATTGCTGTTTTTGTT--TGTCTTTCTAATTTATCCACTATGTCAATGTGGTTGGTT 7505 Query 183642 CTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTT 183701 |||| | |||||||| | |||| || || ||| ||||| | | || | | ||||| Sbjct 7504 CTTTACGCCTAGTTTTGATGTAGTGGCTATATTTCGATTCATTCTCTTTTTCAAAGGTTT 7445 Query 183702 CCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGT 183740 | | || ||||| || || | | |||||||||||||| Sbjct 7444 C-ATAATTGGACATTGAAACTAATTCATATGATGGGAGT 7407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611614369168800