Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq10676 661 0.0 seq3905 257 2e-63 seq3 237 2e-57 seq2 87.8 2e-12 seq68 86.0 7e-12 seq7 84.2 2e-11 >seq10676 Length=153368 Score = 661 bits (732), Expect = 0.0 Identities = 728/965 (75%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCCGCT 164847 ||||||||||| | || ||||| |||||| | ||||| || || ||| ||| || Sbjct 1299 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACT 1240 Query 164848 ACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGT 164907 | ||| |||||| |||||||| |||||||| || || || ||||||||||||||| Sbjct 1239 TCCGTTT---TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 1183 Query 164908 GAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCG 164967 |||||||| | || ||||| | ||||| ||||| || || || ||||| | |||| Sbjct 1182 GAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCT 1123 Query 164968 TCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAA 165027 ||||| || || || | || || ||||| || |||||||||||| || | |||||| Sbjct 1122 ACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAA 1063 Query 165028 TGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCT 165087 ||| | ||||||||||||||||| | | |||| | ||||| | | ||||||||| Sbjct 1062 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1003 Query 165088 TGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 165147 || || |||||||||||||||||||| || ||| || |||||||||||||||||| Sbjct 1002 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 943 Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207 || |||||| || ||||| || |||||| | || |||||| || |||| || | ||| Sbjct 942 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 883 Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267 ||||| ||||| ||||||||||||||||| || |||||||||||||| |||| |||| | Sbjct 882 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 823 Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327 || ||||| || || || |||||||||||||| || || |||||| | || || ||||| Sbjct 822 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 763 Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTC 165387 |||||||| || || || || |||||||||||| | | || ||||| | || Sbjct 762 GTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATC 703 Query 165388 CGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAG 165447 | || || || |||| || | || | || || | || || ||||||||||| Sbjct 702 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAAGAA 643 Query 165448 ACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCC 165507 || || ||||| || ||||| ||||| || || || || | || |||||||| || Sbjct 642 ACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 583 Query 165508 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGG 165567 ||||||||||| ||||| | || |||||| | || || ||||| ||||| ||||| ||| Sbjct 582 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGG 523 Query 165568 TTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 165627 || |||||| | ||| |||| || ||||| |||||||| || |||||||| |||||||| Sbjct 522 TTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 463 Query 165628 TCTATTGTTGATAGTC-AGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGC 165686 || | |||||||||| || || | || |||||||||||| || | |||||||| Sbjct 462 TCAGTAGTTGATAGTCAAGGAC-GTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 404 Query 165687 TGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGC 165746 | || |||||||||||||||||||| ||||| |||||||||||||| || ||||| || Sbjct 403 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 344 Query 165747 TGCTG 165751 ||||| Sbjct 343 TGCTG 339 Score = 589 bits (652), Expect = 2e-163 Identities = 725/988 (73%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || ||||||||||| ||||||||||| || | || |||| ||| ||| | ||| Sbjct 32010 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 32069 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || ||||||||||||||| | || Sbjct 32070 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 32129 Query 166311 AGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCT 166370 || ||| | || ||| || ||| | || || |||||||||||||| || || | Sbjct 32130 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 32189 Query 166371 ATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 166430 | | |||||| | | | || ||||||||||| || ||||| ||||| | ||| Sbjct 32190 TTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGG 32249 Query 166431 TGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGT 166490 || ||| | || || || ||||| ||||||||||||||||||||||| || |||| ||| Sbjct 32250 TGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGT 32309 Query 166491 TTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAAT 166549 || ||| | || || |||||| | ||||| ||| | | | || || || |||||||| Sbjct 32310 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAAT 32368 Query 166550 CGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCA 166609 ||| || |||||||| |||||||| || ||| ||||||||| || || || || ||||| Sbjct 32369 CGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCA 32428 Query 166610 ATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTT 166669 ||| ||||||| || || || ||| || || | || || || |||||| |||| || Sbjct 32429 ATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTT 32488 Query 166670 CCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTAT 166729 | ||||| || || || |||||| |||||||||||||||||||||| || || ||| | Sbjct 32489 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGT 32548 Query 166730 TCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCA 166789 || || | || || | | || || ||||||| ||| ||||| || ||| | | | | Sbjct 32549 ACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 32608 Query 166790 AGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTA 166849 ||||||||| |||||||| ||| || || || | ||||||| |||||||| || Sbjct 32609 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTA 32668 Query 166850 TTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAA 166909 ||||||||| || || ||||||| |||||| || ||||| || |||| ||| ||||| Sbjct 32669 TTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAA 32728 Query 166910 GAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT 166969 | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | | Sbjct 32729 ACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCT 32788 Query 166970 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAG 167029 || | | ||||| ||| | ||||| ||||| |||||||| |||||||| ||| | | Sbjct 32789 TGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCG 32848 Query 167030 GGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGG 167089 ||||| || ||||| || ||||| || |||||||| || || ||||| || || || || Sbjct 32849 TGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGG 32908 Query 167090 TATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGA 167149 ||| || |||||||||| || ||||| |||||||| | | |||||||||| || Sbjct 32909 TATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGA 32968 Query 167150 GGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||| || | || |||||||| ||| Sbjct 32969 GGTTCTACCACGTGGAAACGCTCTTTAA 32996 >seq3905 Length=4339 Score = 257 bits (284), Expect = 2e-63 Identities = 307/414 (74%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 166446 CTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAG 166505 || ||||| ||||||||||||||||||||||| || |||| ||||| ||| | || || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 166506 TTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCC 166564 |||||| | ||||| ||| | | | || || || ||||||||||| || | |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 166565 TATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTT 166624 |||||||| || ||| ||||||||| || || || || |||||||| ||||||| || Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 166625 CGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCA 166684 || || ||| || || | | || || |||||| |||| || | ||||| || || Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 166685 CAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATT 166744 || |||| | |||||||||||||||||||||| || || ||| | || || | || | Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 166745 GCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGC 166804 | | | || || ||||||| ||| ||||| || ||| | | | |||||||||| || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 166805 AAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGT 166858 |||||| ||| || || || ||||||| |||||||| ||||||||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGT 1568 >seq3 Length=29132933 Score = 237 bits (262), Expect = 2e-57 Identities = 377/530 (71%), Gaps = 8/530 (2%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || || |||||||| ||||||||||| || | || |||| ||| ||| | || Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || ||||| || || ||||||||||||||| | || Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 166311 AGCAGTTATCT-GGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369 || ||| | | ||| |||| |||| | || | |||||||||||||| || || Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAATAG 2931952 Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGT 166428 | | |||||| | || || | ||||||||| || ||||| || ||| ||| | | Sbjct 2931953 TTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTC-GTT 2932010 Query 166429 GGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTG 166488 |||| ||| | | || || |||| ||||||||||||||| ||||||| | |||| Sbjct 2932011 GGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAA 2932070 Query 166489 GTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCA 166547 |||| ||| | || || |||||| | ||||| ||| || | || || || |||||| Sbjct 2932071 GTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCA 2932129 Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607 || | || |||||||| |||||||| || || ||||||||| || || |||| ||| Sbjct 2932130 ATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGT 2932188 Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667 ||||| ||||||| || || || ||| || || | || || || || ||| || | Sbjct 2932189 CAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATC 2932248 Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGG 166717 || | ||||| || || || |||| | ||||||| ||||||||||||| Sbjct 2932249 TTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq2 Length=43799612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 164856 TTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGT 164915 |||||||| |||||||| |||| ||| || || || ||||||||||| |||||||| | Sbjct 8463605 TTTTATTATCGCATTCATTGCTGTTCCTCCAGTAGATTTTGATGGTATTTGTGAACCTAT 8463664 Query 164916 CGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAA 164975 | | ||||| | || || ||| | || || || ||||| | ||| ||||| Sbjct 8463665 TTCTCGATCTCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTGC 8463724 Query 164976 CGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTA 165035 || || || | || || ||| | | |||||||||||| | ||||||||| | || Sbjct 8463725 AGCTATTGGTTTGCATTTTTATTCAAACTGGGAAGCTGCATTTGTTGATGAATGGCTATA 8463784 Query 165036 CAA 165038 ||| Sbjct 8463785 CAA 8463787 >seq68 Length=187690 Score = 86.0 bits (94), Expect = 7e-12 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 165115 TCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGC- 165173 |||| ||| || |||||||||| ||||||| || ||| || || ||||| || || Sbjct 91317 TCTTTCCGTCTGGGTATGCGTCTTTGGATTGTTGTTGCAGATTCAGCTCCTGTTGCAGCC 91376 Query 165174 TGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCC 165233 |||| | || |||||| || |||| || | ||| | || ||||| |||||||||||||| Sbjct 91377 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTGATGGAAGTTTTTCTGATGGTATGCC 91436 Query 165234 TC 165235 || Sbjct 91437 TC 91438 >seq7 Length=27187321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 165181 GCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGT 165240 || |||||| || |||| || | ||||||| ||||| ||||||||||||||||| || Sbjct 12808604 GCTGTTTTCTTGATCTACCCAATTAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 12808545 Query 165241 ATCTCTGGTACTTTTAACT 165259 |||||||||||||| |||| Sbjct 12808544 ATCTCTGGTACTTTCAACT 12808526 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 165181 GCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGT 165240 || |||||| || |||| || | ||||||| ||||| ||||||||||||||||| || Sbjct 12822194 GCTGTTTTCTTGATCTACCCAATTAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 12822135 Query 165241 ATCTCTGGTACTTTTAACT 165259 |||||||||||||| |||| Sbjct 12822134 ATCTCTGGTACTTTCAACT 12822116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563585579466240