Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 105 8e-18 seq8 82.4 9e-11 >seq6 Length=53636577 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || |||| | | |||||| ||||||||| Sbjct 23786773 CCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCAGCATTGGAACAATACCA 23786714 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || || ||||||||| ||| | || || || |||| Sbjct 23786713 TTAGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCACGGATGTTGTGAACTGAA 23786654 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||||||||| || || |||| || | |||||| ||| | |||||||| ||| Sbjct 23786653 ACACCTATACCCCCAGCTGATTTACTAATAACCGCACACTCTTTCAATGTATCATATATT 23786594 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| || |||||||| |||| Sbjct 23786593 CCTTCAATGCTATCATCCTTCAT 23786571 >seq8 Length=29681327 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||||||| || | || ||||| |||||| ||||||| || || | ||| | Sbjct 8203910 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCACCGCTGAGACATCAAATG 8203851 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| || | ||||| | ||| || || || || | ||| || | ||| | Sbjct 8203850 GTAAGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATGCCGACAGAAACCCTCATGAG 8203791 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||| | ||| || | ||| || || || ||| | || | Sbjct 8203790 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAGAGGTACGATCTCTCGAG 8203731 Query 48779 TGTTTTAAAACCAAAATAGT 48798 ||||| |||||||| |||| Sbjct 8203730 AGTTTTGAAACCAAAGTAGT 8203711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562033786580640