Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq10676 502 7e-138 >seq10676 Length=153368 Score = 502 bits (556), Expect = 7e-138 Identities = 701/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || |||||||| |||||||| || | |||||||| || || | Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | |||||| | || ||||| || || || Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1207 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1206 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1147 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || ||||| || | | || | ||| || || || | |||||||| |||||| Sbjct 1146 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 1087 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| | | || || ||||||||||| || || || ||| |||| ||| | Sbjct 1086 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1027 Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161 | ||||| ||| | || ||||| ||| || | |||||||||| || | | Sbjct 1026 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 967 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 || || ||| | || ||||| |||||||||| |||| || | | || ||| || Sbjct 966 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 907 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | || || | || ||||| |||||| |||||| |||||||| || ||| Sbjct 906 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 847 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||||||| | |||||||| || || || || || || ||||||||| Sbjct 846 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 787 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 || || ||| ||||| ||||| || ||||| || | || || ||||||||| || Sbjct 786 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 727 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 |||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 726 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 667 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || | || || ||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 666 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 607 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| || || || ||||| ||||| || || |||||| | |||||||| | || Sbjct 606 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 547 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||||||| || || || ||| | || || | ||||| | || ||||| || ||| Sbjct 546 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 487 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||||||||| || || ||||| |||||||| ||| | | ||| | || ||| Sbjct 486 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 427 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||||| Sbjct 426 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 367 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 || ||||| || || ||| |||| Sbjct 366 CACAACTTCCCTCTAGACCTAGC 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146707798393824