Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq10676 574 1e-159 seq2 95.1 4e-15 >seq10676 Length=153368 Score = 574 bits (636), Expect = 1e-159 Identities = 729/998 (73%), Gaps = 6/998 (1%) Strand=Plus/Plus Query 5183 GACTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCC 5242 |||||| |||| ||||| || || ||||||||||||||||| ||||| ||||| |||||| Sbjct 332 GACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCC 391 Query 5243 ATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAG 5302 ||||||||||| |||||||| | | ||| |||||||| || | | || | Sbjct 392 ATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTA 451 Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 ||||| ||||| || ||||| || || || || || || ||||||||||| || || Sbjct 452 TCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCT 511 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || |||| ||| || | || || ||||||| || | ||||||||||||| ||| Sbjct 512 AAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGA 571 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 |||||| || |||||||| |||||||| | || ||||| || || ||||| || ||| Sbjct 572 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACA 631 Query 5483 ATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCA 5542 ||||| || |||||||| ||||| |||||| | || || | || ||| | | Sbjct 632 ATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCT 691 Query 5543 GTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCT 5602 || ||||| | || | |||||| || | | |||||||||||| || | | Sbjct 692 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 751 Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || |||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || Sbjct 752 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 811 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 ||||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| Sbjct 812 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 871 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGC 5781 |||||||| || || | ||||| | || || || | |||| || || ||||| || || Sbjct 872 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGC 930 Query 5782 TGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCG 5841 ||||||||| || |||||| || ||||| || | | | ||||||||||||| | || Sbjct 931 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 990 Query 5842 TCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCC 5901 |||| ||| || | ||||| | ||||| | || | |||| || || || || Sbjct 991 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 1050 Query 5902 ATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCA 5959 ||||| ||||||||||| | ||| || ||||||||||| ||||| || || || ||| Sbjct 1051 GTTGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATCGGATAAAAATGCAAACCA 1108 Query 5960 ATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGAT 6019 || || || | || | || ||| ||||| || || |||||||| || || |||||| Sbjct 1109 ATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGAT 1168 Query 6020 CCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAAT 6079 || | || |||||||| || || || || || ||||| || ||||| | |||||| | Sbjct 1169 CCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATA 1228 Query 6080 ATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACA 6139 ||||| | | ||||||||| || | | || ||||| || ||||||||||| || | Sbjct 1229 ATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACACCAAACCATCCAATG 1288 Query 6140 TAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || ||||| | || ||||| | ||||| |||||| Sbjct 1289 TAAAGACGGTTTTCAGTACTAGTTATCCAGTTACAGAA 1326 >seq2 Length=43799612 Score = 95.1 bits (104), Expect = 4e-15 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 5902 ATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||||| ||||||||||| | | || ||||||||| | | ||| || || || ||||| Sbjct 8463788 ATTGTATAGCCATTCATCAACAAATGCAGCTTCCCAGTTTGAATAAAAATGCAAACCAAT 8463729 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | | | || ||| ||||| || || | ||||||||| || ||||||| Sbjct 8463728 AGCTGCAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGAGATCG 8463669 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | | ||||||| || || || | || ||||| || |||| | |||||| | || Sbjct 8463668 AGAAATAGGTTCACAAATACCATCAAAATCTACTGGAGGAACAGCAATGAATGCGATAAT 8463609 Query 6082 AAATGCAGTAGTTGCGGT---TAAGAGTGCGGGTATCATTAAGACACCAAACCACCC 6135 ||| ||| | | |||| ||||| | || ||||| || ||||||||||| || Sbjct 8463608 AAAAACAGAAACTACGGTCAATAAGA-TAAGG--ATCATCAAAACACCAAACCATCC 8463555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152630247465336