Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5 118 9e-22 seq2 111 1e-19 >seq5 Length=45943323 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29878 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 29937 || ||||| | |||| | || || ||||||||| || |||||||| || || || || Sbjct 37434456 ACATGAGCTAGCATGCAAGTCAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 37434515 Query 29938 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 29997 ||||| ||| | || | ||| || | ||||||||||||||| || || |||||| ||| Sbjct 37434516 CCCATATCCGCTGAACGCTGATACATCTGACACGAGAGCTCCCCTTCCGCCACGTAGAAC 37434575 Query 29998 TGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30057 || | |||||||||||||||| ||||| || | ||| |||||||| || Sbjct 37434576 TGTGCGAACATGTGGCACGGAGGAAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCC 37434635 Query 30058 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 | | ||||| |||| || || || |||||| |||| Sbjct 37434636 GATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 37434673 >seq2 Length=43799612 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||||||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 41543387 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTAAGAGGCAATGTTAAAAGGTACACCAAG 41543446 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||||||||||||||| | |||||||| Sbjct 41543447 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCATTTGCAACGTAAAA 41543506 Query 29997 CTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30056 |||| | ||||||| |||||||| ||||| || | ||| || ||||| || Sbjct 41543507 CTGAGCAAACATGTGGCATGGAGGAAGCGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 41543566 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 ||| || || |||| || || ||||||||| |||| Sbjct 41543567 CGACATTATAATCCGCCGATCGTCAGGGTTGTTCTTGAT 41543605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408564433231748