Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7 120 2e-22 seq3 116 3e-21 seq9 111 1e-19 seq5 86.0 5e-12 >seq7 Length=27187321 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || || ||||| || || |||||||| || | ||| ||| |||| || | || Sbjct 456685 ATGAAGAGTGGACTCTTTGTGGATGTTGTAATCAGCAAGAGTCCTGCCATCTTCGAGCTG 456626 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||| | ||| |||||||| || || ||||| ||||| || || || Sbjct 456625 CTTACCGGCGAAGATCAACCTCTGCTGATCGGGAGGGATACCTTCCTTATCCTGGATCTT 456566 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | || | ||||| || || ||| || || |||| ||| || | ||| Sbjct 456565 GGCTTTAACGTTGTCGATCGTGTCGGAGCTTAACACCTCGAGGGTGATCGTCTTTCAGGT 456506 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || || ||||||||||| Sbjct 456505 AAGAGTCTTAACGAATATCTGCAT 456482 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| | ||| || ||||| || || || ||||| |||||||| || | Sbjct 639430 TTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTTTGGATATTGTAGTCAG 639489 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | |||| || | |||||||| || || || | | ||| ||||| || | Sbjct 639490 CAAGCGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGTCTCTGCTGATCTGGTG 639549 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || || ||||| || || ||| | || | ||||| || | || | Sbjct 639550 GGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCGATTGTGTCTGAGCTCTCAA 639609 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||||| ||||||||||| | || || ||||| |||||||| Sbjct 639610 CCTCCAAAGTGATGGTTTTGCCGGTGAGGGTCTTAACAAAAATCTGCAT 639658 >seq3 Length=29132933 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| || || || ||||||||||| || || || || ||||| || || Sbjct 2316778 CCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCT 2316837 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || |||| || | ||||| || ||||| || | | ||| ||||| || || Sbjct 2316838 AGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 2316897 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || || | || | ||||| || ||||||| Sbjct 2316898 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCACC 2316957 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || | |||||| || ||||||||||| Sbjct 2316958 TCGAGGGTGATGGTCTTTCCTGTGAGAGTTTTCACGAATATCTGCAT 2317004 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| || || || ||||||||||| || || || || ||||| || || Sbjct 2324573 CCACCACGTAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCT 2324632 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || |||| || | ||||| || ||||| || | | ||| ||||| || || Sbjct 2324633 AGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 2324692 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || || | || | ||||| || ||||||| Sbjct 2324693 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCACC 2324752 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || | |||||| || ||||||||||| Sbjct 2324753 TCGAGGGTGATGGTCTTTCCTGTGAGAGTTTTCACGAATATCTGCAT 2324799 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || |||||||| || ||||| || || ||||| ||||| | || | | Sbjct 9517337 ACGCAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGCTAAGGTACGACC 9517278 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || || || || | ||| || || || || ||||||||||| || Sbjct 9517277 ATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGAGGAATGCCTTCCTT 9517218 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| || || || || ||| | || | |||||||| | ||||| || || |||| Sbjct 9517217 ATCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAGTGTGAT 9517158 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || |||||||| | || || ||||| ||||||||| Sbjct 9517157 GGTCTTGCCGGTAAGTGTCTTCACAAAGATCTGCATG 9517121 >seq9 Length=38354807 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || |||||||| || ||||| || |||| || | |||| || | ||| Sbjct 21316045 ATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCAGCGAGAGCACGCCCATCTTCAAGTTG 21316104 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | | ||| |||| || ||||||||||| || || ||||| || Sbjct 21316105 CTTCCCGGCGAAGATAAGCCTCTGCCGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTT 21316164 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | || | ||||| || ||||||| || || |||| || || || || Sbjct 21316165 CGCTTTAACGTTGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCCGT 21316224 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||| || || ||||||||||| Sbjct 21316225 GAGAGTCTTAACGAATATCTGCAT 21316248 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || |||||||| || || | |||||| | || || | ||| Sbjct 21328083 TGAAGTGTCGACTCCTTCTGGATATTGTAGTCAGCCAAGGTTCTGCCGTCCTCGAGCTGC 21328142 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | | ||| ||||| || |||||||| || || || || || || Sbjct 21328143 TTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 21328202 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | ||||| || ||||||| ||||| |||| || || ||||| Sbjct 21328203 GCTTTAACGTTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATTGTCTTTCCGGTG 21328262 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || ||||||||||| Sbjct 21328263 AGAGTCTTAACGAATATCTGCAT 21328285 >seq5 Length=45943323 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| ||||| | | ||| | ||| || || || ||||| || || ||||| || || Sbjct 16837808 CCTCCCCTTAACCTCAGAACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGCC 16837867 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | || || || | || ||||| | ||| ||||| | || Sbjct 16837868 AAGGTGCGACCATCCTCAAGCTGTTTTCCGGTGAAGATCAACCTCTGCTGATCCGATGGG 16837927 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| || || || || || ||| | || | |||||| | ||||| Sbjct 16837928 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGCTCTCCACC 16837987 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || | ||||| || ||||||||||| Sbjct 16837988 TCGAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCAT 16838034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396226838731332