Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq10676 600 1e-166 seq2 116 4e-21 seq3442 96.9 4e-15 seq813 82.4 8e-11 >seq10676 Length=153368 Score = 600 bits (664), Expect = 1e-166 Identities = 737/1001 (74%), Gaps = 22/1001 (2%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGT--TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGA 162559 ||||||||| | || ||| ||| || || | || | || ||||| ||||| |||| Sbjct 1323 TGTAACTGGATAACT--AGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 1266 Query 162560 TGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCAC 162616 |||| ||| ||| | | ||| |||| | || || || ||||||||||| || | Sbjct 1265 TGATTCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATCGCATTCATTGCTGCTC 1209 Query 162617 CTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACA 162676 ||||||| ||||| |||||||| | ||||||||| | || || ||||| || || |||| Sbjct 1208 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACA 1149 Query 162677 ACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTA 162736 | || || || ||||| | |||||| ||| ||||||||| | || || ||||| | Sbjct 1148 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGA 1089 Query 162737 TCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAG 162796 |||||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | | Sbjct 1088 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 1029 Query 162797 TCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTT 162853 | | ||||| | | || | ||| | | | |||||| ||||||||||| || Sbjct 1028 TTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTT 972 Query 162854 ACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCAT 162913 ||| | ||||||||||||||||| ||||||||| || || || || | || || Sbjct 971 TCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 912 Query 162914 TCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTG 162973 ||||| |||||| |||| || | |||||||| ||| ||||| | |||||||| | Sbjct 911 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAG 852 Query 162974 GTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGC 163033 | || ||||||||||| |||| ||| | || ||||| || ||||||||||| || |||| Sbjct 851 GAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGC 792 Query 163034 ACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGC 163093 |||| || || ||| | || || || ||||||||||| || || || ||||||||||||| Sbjct 791 ACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGC 732 Query 163094 ACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACT 163153 | |||||| | || |||||| | | ||||| ||||| || || | || || || Sbjct 731 ATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 672 Query 163154 ACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACT 163213 | || || | ||||| ||||||||||| |||||||||||||| |||||||| || || | Sbjct 671 AAGGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATT 612 Query 163214 TTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCC 163273 |||| || ||||||||||| ||||| ||||||||| || ||||| | || |||||| Sbjct 611 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCT 552 Query 163274 TTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCAT 163333 | || || | || || || | || ||||| ||||| | ||| | |||||||| | Sbjct 551 TAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTT 492 Query 163334 TCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGA 163390 ||||||| || |||||||| ||||||||||| || ||||| ||| || || | Sbjct 491 TCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTA 435 Query 163391 TTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGC 163450 || ||||||||| ||||| ||||| | || |||||||||||||||||||| || | Sbjct 434 TTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 375 Query 163451 GTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 ||||||||||||||||||| || ||||| ||||||| |||| Sbjct 374 GTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 334 >seq2 Length=43799612 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||| | ||| | | | || || || || || Sbjct 8463555 GGATGGTTTGGTGTTTTGATGATCCTTATCTTATTGACCGTAGTTTCTGTTTTTATTATC 8463614 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 ||||||||||| | |||||||| ||| | |||||||| | |||||| || | | || Sbjct 8463615 GCATTCATTGCTGTTCCTCCAGTAGATTTTGATGGTATTTGTGAACCTATTTCTCGATCT 8463674 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 ||||| ||||| ||| | || || || ||||| | ||| || ||| ||||||||| Sbjct 8463675 CTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTGCAGCTATTGGT 8463734 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAAT 162774 | || || ||| | | ||||||||| ||| | ||||||| ||| | || ||| Sbjct 8463735 TTGCATTTTTATTCAAACTGGGAAGCTGCATTTGTTGATGAATGGCTATACAAT 8463788 >seq3442 Length=4740 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 163171 CAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTC 163230 |||||| |||| |||||||||||||| |||||||| || || ||||| || ||||||||| Sbjct 4279 CAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTC 4338 Query 163231 CAGTATGCATCTTTCAACAACTCACGTT 163258 || ||||| ||||||||| || |||| Sbjct 4339 CAATATGCTAGTTTCAACAATTCTCGTT 4366 >seq813 Length=20179 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 163432 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 |||||||||||||| || |||||||||||||||||||| || ||||| ||||||| |||| Sbjct 10706 ATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 10647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553010990833440