Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq10676 551 6e-152 seq3905 201 1e-46 seq3 185 1e-41 seq69 154 2e-32 seq6 118 1e-21 >seq10676 Length=153368 Score = 551 bits (610), Expect = 6e-152 Identities = 719/995 (72%), Gaps = 0/995 (0%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 ||||| | ||| ||||| ||| | ||||| || || | || ||||| || || || Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 163011 |||||||| || | ||| | |||||| | ||| || |||| ||| | |||||||| Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1207 Query 163012 CCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAAC 163071 || || || ||||| || || ||||| || || |||| || || | || || ||||| Sbjct 1206 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1147 Query 163072 ATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATC 163131 || || || ||||| || |||| |||| || |||||| | || || ||||| ||| Sbjct 1146 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 1087 Query 163132 TGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTC 163191 |||||||| ||||| ||||||| ||||| || ||||||||||||| |||| | || Sbjct 1086 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1027 Query 163192 TTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCGC 163251 | ||||| | | || | | |||||||| ||||| ||||||||| | || Sbjct 1026 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 967 Query 163252 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCA 163311 | |||||||| || ||||| ||| ||||| || || ||||||||||| || | || Sbjct 966 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 907 Query 163312 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATC 163371 || ||| || |||| || | |||||||| ||| ||||| | ||||| || || ||| Sbjct 906 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 847 Query 163372 TCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 163431 ||||| || ||||||| ||| |||| ||||| || ||||||||||| || |||||||| Sbjct 846 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 787 Query 163432 TTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGC 163491 || || ||||| || || |||||||| ||||| || || || || || |||||||| Sbjct 786 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 727 Query 163492 AGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGT 163551 | | || || ||| | || | || || || |||| ||| || || | || Sbjct 726 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGG 667 Query 163552 TACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGT 163611 |||| || |||||||||||||| || |||||||| || || || || || || || || Sbjct 666 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 607 Query 163612 CGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCA 163671 || ||||||||||||||||| |||||||| | | | || |||||| | || Sbjct 606 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 547 Query 163672 GCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAAC 163731 || ||||| || || || || ||||||||||| | || | || || ||||| |||||| Sbjct 546 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 487 Query 163732 CTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACT 163791 || || |||||||| |||||||| || | ||||| |||| || ||||| | || ||| Sbjct 486 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 427 Query 163792 TGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCA 163851 ||||| || | ||||||| ||| || |||||||||||||||||||| ||||| || Sbjct 426 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 367 Query 163852 CACAACTTCCCACTCGATCTTGCTGCTGCTGAGTC 163886 ||||||||||| || || || ||||||| |||||| Sbjct 366 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 502 bits (556), Expect = 3e-137 Identities = 717/1007 (71%), Gaps = 2/1007 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || ||||| |||||||| || |||||||| || | || || Sbjct 31992 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 32051 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||| ||| | || | || |||||| | || || ||| | ||||| || ||| Sbjct 32052 CCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 32111 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || || ||||| | ||| ||||||| | |||||| || ||| | || || || || Sbjct 32112 TATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTT 32171 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || |||||| || | | | |||||| | | |||| ||||||||||| | || Sbjct 32172 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAA 32231 Query 164859 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGT 164918 || |||| || ||||| ||| | || || || ||| ||| || |||||||||||| Sbjct 32232 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGT 32291 Query 164919 GCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTAT 164977 || ||||| |||| ||||| ||| | || || ||||| || || || ||| | | | Sbjct 32292 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 32350 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 || ||||| ||||| || || ||||||||||| |||||||||||||| ||||| || Sbjct 32351 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCT 32410 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 || || ||||| ||||| || ||||||| || || || ||||| || || || || Sbjct 32411 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 32470 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 ||| ||||| | | || | ||||| || || || ||||| | ||||| || ||||| Sbjct 32471 ATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 32530 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 |||||| || || ||| | |||| | || || ||| ||||||||||| | || || Sbjct 32531 GATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGT 32590 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 |||||||| |||| || ||||| || |||||||| || || ||| | | || Sbjct 32591 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 32650 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 || | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || Sbjct 32651 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 32710 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | || Sbjct 32711 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 32770 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||| || |||| | | ||||| ||| | ||||| ||||| || || || Sbjct 32771 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTT 32830 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 ||| ||||| ||| | ||||| |||||||| ||||||||||| ||||| || ||||| Sbjct 32831 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAA 32890 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 || || || || ||||| | || |||||| |||| || ||||| || |||||||| Sbjct 32891 TATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 32950 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 32951 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 32997 >seq3905 Length=4339 Score = 201 bits (222), Expect = 1e-46 Identities = 295/415 (71%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 164892 CTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAG 164951 || ||| ||| || |||||||||||||| ||||| |||| ||||| ||| | || || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 164952 TTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCC 165010 ||||| || || || ||| | | | || ||||| ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 165011 TATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTT 165070 |||||||||||||| ||||| || || || ||||| ||||| || ||||||| || Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 165071 CGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCA 165130 || || ||||| || || | || ||| ||||| | | || | ||||| || || Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 165131 CAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATT 165190 || |||| | ||||| || ||||||||||| || || ||| | |||| | || | Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 165191 GCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGC 165250 | ||| ||||||||||| | || || |||||||| |||| || ||||| || || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 165251 AAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTC 165305 |||||| || || ||| | || || | ||||| |||||||| |||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 185 bits (204), Expect = 1e-41 Identities = 363/529 (69%), Gaps = 6/529 (1%) Strand=Plus/Plus Query 164637 GATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCC 164696 || |||||||||||||| || |||||||| || | || |||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 164697 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCT 164756 | || |||||| | || || ||| ||||||| || ||||| || ||||| | ||| Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 164757 TCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGC 164815 ||||||| | ||||| ||| |||| | || | || || || || |||||| || Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAGTTTCTACTCCTGCTAATAG 2931952 Query 164816 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTG 164875 | | |||||| || || | || ||||||||| | || || |||| || || Sbjct 2931953 TTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGTTG 2932011 Query 164876 GTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 164935 ||| ||| | | || || ||| ||| || ||||||||| |||| |||| |||| | Sbjct 2932012 GTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAG 2932071 Query 164936 TTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTA 164994 ||| ||| | || || ||||| || || || ||| || | || ||||| ||||| | Sbjct 2932072 TTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAA 2932130 Query 164995 TTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTC 165054 | | ||||||||||| |||||||||||| | ||||| || || || || | |||| Sbjct 2932131 TAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGTC 2932189 Query 165055 AGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGT 165114 | || ||||||| || || || ||||| || || || || ||| | ||| | | | Sbjct 2932190 AATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCT 2932249 Query 165115 TCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 165163 | | ||||| || || || |||| | ||||| | ||||||||||| Sbjct 2932250 TTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq69 Length=186703 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 |||||||| ||||| || || |||| || || || ||| | || ||||| || Sbjct 41188 ACTCCTGAAGGAGAGCAAGAGGTTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCT 41247 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || ||||||||| | || | ||||||||| ||||||||| ||||||| |||||| Sbjct 41248 GAGGAAGCAGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCGAGCTGTGCA 41307 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| |||||| ||||||| ||| ||| ||| ||||| || ||||| ||| Sbjct 41308 GGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 41367 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 ||||| | ||||||||| || || |||| || ||||| || |||||| Sbjct 41368 ATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 41415 >seq6 Length=53636577 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 164021 ACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGCA 164080 ||||| || || || || ||| |||| || || || ||| | || ||||| || Sbjct 10327057 ACTCCAGAAGGTGAGCAAGAGGTCGAGTGCGACGACGACGTTTACGTCCTCGACGCTGCG 10326998 Query 164081 GAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCA 164140 || ||||| || | || | ||||||||| ||||||||| ||||||| |||||| Sbjct 10326997 GAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCTGGTTCTTGCTCGAGCTGTGCA 10326938 Query 164141 GGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGACGATGATCAG 164200 |||||| |||| ||||| | ||||| ||| ||| ||| ||||| || ||||| ||| Sbjct 10326937 GGTAAAGTTGTGTCTGGTTCCGTTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAG 10326878 Query 164201 ATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 || || | ||| || || || || |||| || ||||| || |||||| Sbjct 10326877 ATCGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 10326830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563134439678880