Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 206 5e-48 seq6 140 6e-28 seq2371 131 3e-25 >seq4 Length=50002108 Score = 206 bits (228), Expect = 5e-48 Identities = 438/647 (68%), Gaps = 10/647 (2%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| |||| ||| || || | ||| ||| ||| ||||| ||| | | | Sbjct 15359223 AAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCCTCCGTGAG 15359164 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || | | || | || ||||| || |||||| || || | ||| | || ||||| Sbjct 15359163 CTTCGTCCTCAA---CAAGGTATAGATCAGGCAGGCGAAATCGCAGTGAAGCCCCTCGTC 15359107 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 | ||| ||| ||||||||||| ||||||||||||| ||| | || |||||||| Sbjct 15359106 TCTCGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCA 15359047 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || | ||| || ||||||||||| || ||||| ||||| ||| || Sbjct 15359046 GAAGATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCGACGAT 15358987 Query 48280 CCTCTCTCCGAAAG-AAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| |||||| | | || ||| |||||| | ||||| | ||||||| Sbjct 15358986 CCTCTCCGCGAAAGTCTGAGATC-CGTC---GATCCACTTCATGGCCCATTGGGCCTTCT 15358931 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTG-CGTCC 48397 || || ||| || || ||||| |||||||||||||| | | | ||| | || ||| Sbjct 15358930 TCGCGACGCAGGGGATGGTCTCGATGGCCCGGAAGAGATGGTCCCTCTC-CTTGTTATCC 15358872 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | ||||| |||||| |||||||| ||||| | ||||| || |||||| Sbjct 15358871 TTGATGTAGGTGTCGAGCAGGAGGCTATACATCTCTGAGTGGATGTTCTCAATCGCGATC 15358812 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||| ||||||||||| | ||||| | ||||| || || | ||| | Sbjct 15358811 TGGAAGCCGTAGAAGGCACGCGCCTCGGAGACCTGGACGTCGGACATGAACCGGGAGGCG 15358752 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 || ||||| ||| || || || || || || |||||||| ||||| ||||| | ||| Sbjct 15358751 AGGTTCTCCAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCTAGGACGTGTTTGATGAAG 15358692 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 |||||||| || | ||||| | |||| | || |||| | || || ||||| Sbjct 15358691 TGGCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCC 15358632 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || | ||||||||||| || || || |||||||| |||| || Sbjct 15358631 TCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTACATCTCCCAGAT 15358585 >seq6 Length=53636577 Score = 140 bits (154), Expect = 6e-28 Identities = 263/382 (69%), Gaps = 15/382 (4%) Strand=Plus/Minus Query 48323 GCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTG 48382 ||||| | ||||||||||||| ||| || || ||||| || || |||||||| | | Sbjct 17376070 GCCCATTGGGCCTTCTTCTTGACGCAAGGGATGGTCTCGATCGCGCGGAAGAGATGGTCC 17376011 Query 48383 CACTCACCTGC-GTCCGCAACATAGGTAGTGAGCA----GCTTTGCGTACATCTCAGAGT 48437 | ||| | || ||| | || ||| | || ||| ||||||||| |||| Sbjct 17376010 CTCTC-CTTGTTGTCTTTGATGTAAGTATCTAACAAGAGGCT----GTACATCTCGGAGT 17375956 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||||| ||||||||||| | |||||| | ||||| || | Sbjct 17375955 GGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGGACGT 17375896 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | | ||| | |||||||| ||| ||||| || || || || ||||||| Sbjct 17375895 CGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGG 17375836 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG----AGCATTCCAGCCCTGT 48613 | ||||| ||||| | ||| ||||||||| || | |||| || | |||| | | Sbjct 17375835 CGAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTTTGC-TCCCAGTCGCGG 17375777 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTAC 48673 ||||| | ||||| ||||| || | ||||||||||| || ||||| |||||| Sbjct 17375776 GTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTAC 17375717 Query 48674 ATGCCCCATATGTCCGGATAGT 48695 || |||| || | ||| |||| Sbjct 17375716 ATCTCCCAGATCTGCGGGTAGT 17375695 >seq2371 Length=6673 Score = 131 bits (144), Expect = 3e-25 Identities = 262/382 (69%), Gaps = 15/382 (4%) Strand=Plus/Minus Query 48323 GCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTG 48382 ||||| | ||||| ||||| | ||| || |||||||| || || |||||||| | | Sbjct 6624 GCCCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCGGAAGAGATGGTCC 6565 Query 48383 CACTCACCTGC-GTCCGCAACATAGGTAGT----GAGCAGCTTTGCGTACATCTCAGAGT 48437 | ||| | || ||| | || || || ||| || | ||||||||| |||| Sbjct 6564 CTCTC-CTTGTTGTCTTTGATGTAAGT-GTCTAAGAGGAGACT---GTACATCTCGGAGT 6510 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||||| ||||||||||| | |||||| | ||||| || | Sbjct 6509 GGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGGACGT 6450 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | | ||| | |||||||| ||| ||||| || || || || ||||||| Sbjct 6449 CGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAGAAGG 6390 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG----AGCATTCCAGCCCTGT 48613 | ||||| ||||| | ||| || |||||| || | |||| || | |||| | | Sbjct 6389 CGAGGACGTGTTTGACGAAGTGTCGCTCGCCGTCGTTGAGGTTTTGC-TCCCAGTCGCGG 6331 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTAC 48673 ||||| | ||||| ||||| || | ||||||||||| || ||||| |||||| Sbjct 6330 GTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTAC 6271 Query 48674 ATGCCCCATATGTCCGGATAGT 48695 || |||| || | ||| |||| Sbjct 6270 ATCTCCCAGATCTGCGGGTAGT 6249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931408486947840