Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 165 2e-35 >seq4 Length=50002108 Score = 165 bits (182), Expect = 2e-35 Identities = 387/573 (68%), Gaps = 17/573 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| || ||| |||||||||||| || | ||||| Sbjct 15358585 ATCTGGGAGATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGATCTC 15358644 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACG---AGCAGCATTTTCTCAAG 25593 || |||| || |||| | ||| ||| |||| ||| || || |||| Sbjct 15358645 TCCGGAGACACACGCGACTGGGAGAATCT---CAACGACGGAGAGCGCCACTTCATCAAA 15358701 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || ||||| || | | Sbjct 15358702 CACGTCCTAGCCTTCTTCGCCGCCTCCGACGGAATCGTCCTGGAGAACCTCGCCTCCCGG 15358761 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCAT 25712 |||| || || ||| | ||||| ||| |||||||| |||||||| || || Sbjct 15358762 TTCATGTCCGACGTCCAGGTCTCCGAGGCGC-GTGCCTTCTACGGCTTCCAGATCGCGAT 15358820 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| ||||| | || || || ||||| | || | Sbjct 15358821 TGAGAACATCCACTCAGAGATGTATAGCCTCCTGCTCGACACCTACATCAAGGATAACAA 15358880 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| || | || || | ||||||||| ||| ||| || || || |||||| | Sbjct 15358881 GGAGAGGGACCATCTCTTCCGGGCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCA 15358940 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||||||||||||||| || | | || || || | ||| || | || |||| Sbjct 15358941 ATGGGCCATGAAGTGGATCGACGGATCTCAG----ACTTTCGCGGAGAGGATCGTCGCCT 15358996 Query 25892 TTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | || ||| ||||| || ||||| ||| ||| || ||| | |||||||||||||| Sbjct 15358997 TCGCCTGC-GTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CGATCTTCTGGCTCAA 15359054 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || ||| |||||| || ||| ||| ||||||||||| ||| || |||||||| Sbjct 15359055 GAAGCGTGGGCTCATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCGAGAGACGAGGG 15359114 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 || ||| | ||||| ||||||||| |||| || Sbjct 15359115 GCTTCACTGCGATTTCGCCTGCCTGATCTATAC 15359147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928720845661440