Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq10676 679 0.0 seq3905 286 4e-72 seq3 224 1e-53 seq722 104 2e-17 seq3442 96.9 4e-15 seq68 91.5 2e-13 seq7 84.2 2e-11 >seq10676 Length=153368 Score = 679 bits (752), Expect = 0.0 Identities = 727/957 (76%), Gaps = 8/957 (1%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGC---TTCAT 8345 || |||||||| ||| | ||||| || ||| || ||| |||| || || | || || Sbjct 1284 GGATGGTTTGGTGTTTTGATGATTCCTACC-TTATTGACCGCAAC---TTCCGTTTTTAT 1229 Query 8346 TACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGG 8405 || ||||||| ||||||||||||| || || || || || || || ||||| ||| |||| Sbjct 1228 TATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGG 1169 Query 8406 ATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAAT 8465 |||||| | ||||| ||||| || || || ||||| || |||| | ||| || || Sbjct 1168 ATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTAT 1109 Query 8466 TGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGG 8525 ||| | || || || || ||||||||||| || || ||||||| ||||| |||||||| Sbjct 1108 TGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGG 1049 Query 8526 TGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCG 8585 ||||||||| | || | ||| | ||||| | ||||| || | |||||||||||| Sbjct 1048 TGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCG 989 Query 8586 TGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGC 8645 ||| ||||||||| || ||| || || |||||||||||||| ||||||||| || || Sbjct 988 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 929 Query 8646 TCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTC 8705 ||||||||| |||||| ||||||| ||| | |||| || |||||||||| || || Sbjct 928 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTC 869 Query 8706 TGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGA 8765 ||||||||||||||| || ||||| ||||| ||||||| |||| |||| ||||||||||| Sbjct 868 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGA 809 Query 8766 GCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATC 8825 ||||||||| || |||||||| || |||||| | ||||| |||||||| |||||||| || Sbjct 808 GCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC 749 Query 8826 TCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGA 8885 || ||| || ||||||||||| | || |||||| || | | || ||||| || Sbjct 748 CCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 689 Query 8886 AACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGT 8945 || || ||| || | || |||| |||||||||||||| ||||||||||||||||| Sbjct 688 AAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGT 629 Query 8946 TGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAG 9005 || ||||| || || ||||| || ||||||||||||||||| ||| ||||||||| | Sbjct 628 AGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCG 569 Query 9006 AAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGG 9065 || ||||||||| | || || ||||| || || || || |||||||| || | || Sbjct 568 TTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGG 509 Query 9066 CGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGG 9125 | || |||||||||||||| ||||| ||||| |||||||| || | | || | Sbjct 508 TATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG 449 Query 9126 ACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGA 9185 |||||||| || | || || ||||| || | ||||||| || || |||||||| Sbjct 448 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 389 Query 9186 AGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGAGTC 9242 ||| ||||| ||| | || || ||||||||||| || ||||| || |||| |||||| Sbjct 388 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 578 bits (640), Expect = 4e-160 Identities = 727/998 (73%), Gaps = 0/998 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || ||||| |||||||| ||||||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| ||| ||| | || | || || ||| | || || || || ||| Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || ||||| ||||| ||| | || ||| || | || ||| ||||| | Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32159 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 32160 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32219 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 ||||| | || |||||||| || ||| || | || || || ||||||||||| Sbjct 32220 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32279 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || |||||||| || ||||| ||||| || ||||||||||| || ||||| || || || Sbjct 32280 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32339 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | || | | |||||||| ||||| ||||| || ||||| || |||||||||||||| Sbjct 32340 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 32399 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 ||| || || || |||||||| || || ||| |||||||||||||||| ||||| || Sbjct 32400 TCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 32459 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || ||||| || || || ||| | ||||| |||| || |||||||||||||| | || Sbjct 32460 GTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 32519 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || || |||||||||||||| |||||| ||||||| | ||| || ||| || || || Sbjct 32520 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCAT 32579 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | ||||||||||| || | | | ||||||| || ||||| || ||| ||| Sbjct 32580 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCT 32639 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 ||| | ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 32640 TTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCA 32699 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || ||||| |||||||| ||||||||| ||| | |||||||||||| | |||||| Sbjct 32700 CAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 32759 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || | ||| | |||| | || ||||| | | ||||| ||| | || || ||| Sbjct 32760 CCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGT 32819 Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714 || || || || || || || || ||| | || | |||||||| ||||||||||| ||| Sbjct 32820 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTC 32879 Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774 ||||| || ||||| ||| | ||||||||| |||| || |||||||| | || || Sbjct 32880 TATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAG 32939 Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| | || | ||||| || || ||||| || Sbjct 32940 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 32977 >seq3905 Length=4339 Score = 286 bits (316), Expect = 4e-72 Identities = 311/413 (75%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 10100 CTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAG 10159 || ||||||||||| || |||||||| || ||||| ||||| || ||||||||||| || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 10160 TTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCT 10219 ||||| || || ||| || | | |||||||| ||||| ||||| || | ||| || Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCCA 1275 Query 10220 ATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTT 10279 |||||||||||||| ||| || || || |||||||| || || ||| ||||||||||| Sbjct 1276 ATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTT 1335 Query 10280 GCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCAT 10339 ||||| ||||| || || |||| || || || ||| | ||||| |||| || |||||| Sbjct 1336 GCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCAT 1395 Query 10340 AATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTC 10399 ||||||| | || || || |||||||||||||| |||||| ||||||| | ||| || Sbjct 1396 AATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTG 1455 Query 10400 CTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCA 10459 ||| || || || || | ||||||||||| || | | | ||||||| || ||| Sbjct 1456 TTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCA 1515 Query 10460 AACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGT 10512 || || ||| |||||| | ||||||| ||||| || ||||| ||||| Sbjct 1516 AATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGT 1568 >seq3 Length=29132933 Score = 224 bits (248), Expect = 1e-53 Identities = 368/528 (70%), Gaps = 2/528 (0%) Strand=Plus/Plus Query 9845 GATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCA 9904 || |||||||||||||| ||||||||||| ||| | || ||||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 9905 ATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACACTCACGGACTTGCA 9964 | || || ||| | || || || || ||||| || ||||| ||||| ||| | || Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 9965 AGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCT 10024 ||| || | || ||| | | | | || | || || || || |||||| || | Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAATAGT 2931953 Query 10025 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGG 10084 | |||||| || || | || ||||||||| | || |||||||| || ||| Sbjct 2931954 TTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGTTGG 2932012 Query 10085 ATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGC 10144 || | | || || |||| |||||| || |||||| | || |||| ||||| | Sbjct 2932013 TGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAGT 2932072 Query 10145 TTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATC 10204 ||||||||||| || ||||| || || ||| || | | |||||||| ||||| || Sbjct 2932073 TTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATA 2932132 Query 10205 GCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAG 10264 | || ||||| || |||||||||||| | ||| || || || ||||| | || || Sbjct 2932133 ACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGTCAA 2932191 Query 10265 TCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTC 10324 ||| ||||||||||||| || ||||| || || ||||| || || || ||| | |||| Sbjct 2932192 TCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCTTT 2932251 Query 10325 CTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGA 10372 |||| || ||||||||||||| | || || | |||||||||||| Sbjct 2932252 TTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGGA 2932299 >seq722 Length=22714 Score = 104 bits (114), Expect = 2e-17 Identities = 119/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 10217 CCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTC 10276 || |||||||||||||| || ||| || || |||||||| | || | | |||||||| Sbjct 7561 CCAATTGCTGTTTTTGTTTGTCTTT--CTAATTTATCCACTATGTCAATGTGGTTGGTTC 7504 Query 10277 TTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTT 10336 ||| |||| ||||| | || | ||| || || || ||| ||||||| || | || ||| Sbjct 7503 TTTACGCCTAGTTTTGATGTAGTGGCTATATTTCGATTCATTCTCTTTTTCAAAGG-TTT 7445 Query 10337 CATAATTGGACGCTCAATCCCTTCCATATGATGGGAGT 10374 ||||||||||| | || | | |||||||||||||| Sbjct 7444 CATAATTGGACATTGAAACTAATTCATATGATGGGAGT 7407 >seq3442 Length=4740 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 8918 GTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCT 8977 |||||||| | ||||||||||||||||| || ||||| || || ||||| || ||||||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 8978 TCCAATATGCATCTTTTAACAATTCT 9003 |||||||||| ||| ||||||||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCT 4362 >seq68 Length=187690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 8599 TCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCG-C 8657 |||| ||| || || ||||||| |||||| ||||||| | || ||||||||||| | | Sbjct 91317 TCTTTCCGTCTGGGTATGCGTCTTTGGATTGTTGTTGCAGATTCAGCTCCTGTTGCAGCC 91376 Query 8658 TGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCC 8717 |||| ||||||| ||| | |||| || ||||| | || || |||||||||||||| Sbjct 91377 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTGATGGAAGTTTTTCTGATGGTATGCC 91436 Query 8718 TC 8719 || Sbjct 91437 TC 91438 >seq7 Length=27187321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 10211 TCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGT 10270 |||| || |||||||||||||| || ||| | | |||||||| | || | | || Sbjct 26671815 TCTGATCCAATTGCTGTTTTTGTTTGTCTTTCCA--AGTTATCCACTATGTCAATGTGGT 26671872 Query 10271 TGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAG 10330 |||||||||||||| ||||| || || ||| || || || ||| ||||||| || | Sbjct 26671873 TGGTTCTTTGCGCCTAGTTT-GGGGTAATGGCTATATTTCGATTCATTCTCTTTTTCAAA 26671931 Query 10331 GGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGA 10372 | |||||||||||||| | || | | ||||||||||| Sbjct 26671932 AG-TTTCATAATTGGACATTGAACCTAATTTATATGATGGGA 26671972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516411075744000