Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 >seq5 Length=45943323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| |||||| | || ||||||||||| || || || || ||||||||| | ||| Sbjct 20718260 GACAAGGAGGGAATACCACCGGATCAACAGAGGCTGATATTCGCTGGCAAACAACTTGAA 20718201 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| || ||| | || || || ||||| || ||||| || ||||| ||| |||| || Sbjct 20718200 GATGGTAGAACCCTTGCGGACTACAACATCCAGAAAGAGTCAACTCTTCACTTGGTCTTG 20718141 Query 28767 AGATTACGAGGAGGGA 28782 || | |||| |||| Sbjct 20718140 AGGCTTAGAGGTGGGA 20718125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425349448986204