Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq10676 533 4e-147 seq2 87.8 5e-13 >seq10676 Length=153368 Score = 533 bits (590), Expect = 4e-147 Identities = 713/986 (72%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 343 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 402 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 403 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 462 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 463 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 522 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 523 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 582 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || ||||| || || || Sbjct 583 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 642 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 643 TTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 702 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | | || ||||||||| |||| | || |||||||| Sbjct 703 GATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC 762 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 763 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 822 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 823 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 882 Query 18374 TCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 |||| || || | | ||||| || | || | |||||||| || || || ||||| ||| Sbjct 883 ACCAATTGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCA 940 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||| |||||| || |||||||| || | ||||||||||||| | || ||||| ||| Sbjct 941 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAA 1000 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 || | || | | |||||| | ||||| |||| ||| || || ||||| |||| | Sbjct 1001 CAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGC 1060 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 || || || | || ||||||||||||||| || || || || | ||| || || ||| Sbjct 1061 CATTCATCAACGGATGCAGCTTCCCAGATCGGATAAAAATGCAAACCAATAGCTGCAGAA 1120 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 | || | || || ||||| || || |||||||| || || | | ||| || ||||| Sbjct 1121 GTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGT 1180 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTA 18731 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | | Sbjct 1181 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAA 1240 Query 18732 GCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTG 18791 | |||||| || | | ||| ||||| | || |||||||| || | ||| || ||||| Sbjct 1241 GTTGCGGTCAATAAGGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTT 1300 Query 18792 TTTGTACTCGTAACCCAGTCACATAA 18817 | ||||| || | ||||| ||| || Sbjct 1301 TCAGTACTAGTTATCCAGTTACAGAA 1326 >seq2 Length=43799612 Score = 87.8 bits (96), Expect = 5e-13 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602 || |||| ||| || || | ||||||||||||| ||| || || || | ||| || Sbjct 8463787 TTGTATAGCCATTCATCAACAAATGCAGCTTCCCAGTTTGAATAAAAATGCAAACCAATA 8463728 Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662 || ||| | | | || || ||||| || || | ||||||||| || | | || Sbjct 8463727 GCTGCAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGAGATCGA 8463668 Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722 || | ||| |||| ||||||||| | || || |||||| |||||| ||||| || | | Sbjct 8463667 GAAATAGGTTCACAAATACCATCAAAATCTACTGGAGGAACAGCAATGAATGCGATAATA 8463608 Query 18723 AATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCC 18775 || | | | || |||| || | | ||||||| | || |||||||| || Sbjct 8463607 AAAACAGAAACTACGGTCAATAAGATAAGGATCATCAAAACACCAAACCATCC 8463555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151299216231544