Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq10676 567 9e-157 seq3905 241 2e-58 seq3 214 2e-50 >seq10676 Length=153368 Score = 567 bits (628), Expect = 9e-157 Identities = 736/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 32992 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 32933 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| || || | |||||| || || || || || || || ||||| ||| Sbjct 32932 TGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTC 32873 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 32872 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 32813 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 32812 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTACAAAT 32753 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 32752 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 32693 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 32692 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 32633 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 32632 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 32573 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | | ||| || | ||||| | ||| || || ||||||||||| |||||||| | Sbjct 32572 GCGCATAACAGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTTCAAT 32513 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| || || |||||||| Sbjct 32512 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCGCTACACCAAAA 32453 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || ||||| ||| |||||| Sbjct 32452 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAA 32393 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| || || ||||| || || || | | || | | ||| Sbjct 32392 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCA 32333 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| ||||| || | || || |||||||||||||| |||||| Sbjct 32332 AGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCACCGTGGAGAGCAACAAAA 32273 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 32272 GCCCACAGACCGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAC 32213 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || || ||||| || | ||| Sbjct 32212 AGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAAAAA 32153 Query 102550 TTAGCACCTTCAAGGTA---ACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 || |||||| | || ||||| | | || || |||||||| ||||| |||| Sbjct 32152 TTGCAACCTTCTAAATAGGAACTAGCC---AATCCATGAGTATACCATGAAGTTACAAAG 32096 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || || | ||| ||||| | |||| ||| ||| ||||| || | ||| ||| Sbjct 32095 GTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCA 32036 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||||| ||||| || ||||| || | | ||||||||||| || ||||| Sbjct 32035 GACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 31980 Score = 536 bits (594), Expect = 2e-147 Identities = 699/972 (72%), Gaps = 6/972 (1%) Strand=Plus/Plus Query 103162 AGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTC 103221 |||||| ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||| Sbjct 331 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 390 Query 103222 CATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACC 103281 |||||| || ||| ||||| | || || ||||| || || | ||||| || |||| Sbjct 391 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 450 Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||||| | || |||||||| ||||| || || |||||||| ||||| || |||| ||| Sbjct 451 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 510 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 | || || ||||| ||||| ||||| || | Sbjct 511 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 570 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 || |||||||| || |||||||||||||| || || || ||||| ||||| ||||| Sbjct 571 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 630 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTC 103521 |||||||| || ||||| ||||| ||||| |||| || | || ||||||| |||| Sbjct 631 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTC 690 Query 103522 AGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTG 103580 || || || | || | | | | || || || | ||||| ||||||||||| || || | Sbjct 691 TGTGGTTTCCCTGATCAAACTA-GAAGTTACCAAAGAACCATGCATAGCACTAAATAGGG 749 Query 103581 AACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTT 103640 | || ||||| || ||||| || || | |||||| || |||||||| |||||||| || | Sbjct 750 AGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCT 809 Query 103641 CGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGG 103700 | || ||||| || | ||| ||||||| || || || || || | ||||||| |||| | Sbjct 810 CAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAG 869 Query 103701 AGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAG 103760 | || |||||||||| ||||||| |||||| || || | ||||| |||||||||| Sbjct 870 AAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAG 929 Query 103761 CAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCAC 103820 | || ||||| ||| ||||| || ||||| ||||||||| | | ||||||||||| Sbjct 930 CTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCAC 989 Query 103821 GTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCAC 103880 | |||||||| | | |||| | ||||| | || | |||| ||||||||| Sbjct 990 GACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCAC 1049 Query 103881 CGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAA 103940 |||| || ||||| ||||||| ||||| |||||||| || ||||| || || | ||||| Sbjct 1050 CGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGATAAAAATGCAAACCAA 1109 Query 103941 TTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGA 103998 | || || || || |||| || ||||| || || || ||||| ||||| | || || Sbjct 1110 TAGC--TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1167 Query 103999 ACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAAC 104058 |||| || ||||||||||| || || ||||| || ||||| || || | ||| || | Sbjct 1168 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1227 Query 104059 GATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAAC 104118 || || | ||||| | ||| | || || ||||||| ||||| ||||| |||| Sbjct 1228 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACACCAAACCATCCAAT 1287 Query 104119 ATAGAGACGGTT 104130 || |||||||| Sbjct 1288 GTAAAGACGGTT 1299 >seq3905 Length=4339 Score = 241 bits (266), Expect = 2e-58 Identities = 301/413 (73%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 102025 ACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGA 102084 |||||||||||||| ||||| |||| || | || || ||| || ||||| | Sbjct 1568 ACCATTGAATAAGTTTCTTCGGCTTGAGTTAGGTTAAAAGCACGGAATGTATTTGCACCA 1509 Query 102085 TCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCT 102144 |||||||||||| | | ||| || || ||||| |||| || || || | | ||| || Sbjct 1508 TCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCC 1449 Query 102145 CCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAG 102204 | ||||| | ||| || || ||||||||||| |||||||| | |||| ||||| || Sbjct 1448 GCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTTCAATATCCAATTATGAAAC 1389 Query 102205 CCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAAC 102264 || || | ||||| | ||||| |||||| | || |||||||| |||||||||||| Sbjct 1388 CCTTGGAAAAAGAGGATGAATCGAAATATAACCGCTACACCAAAACTAGGCGCAAAGAAC 1329 Query 102265 CAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCA 102324 |||| || || || || ||||| || ||||| ||| ||||||||||| || || ||| Sbjct 1328 CAACCAGATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAAACAGCAATTGGACCA 1269 Query 102325 GAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGA 102384 |||| || || ||||| || || || | | || | | ||| | || |||||||| Sbjct 1268 AAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGT 1209 Query 102385 AGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAG 102437 | ||| ||||| || | || || |||||||||||||| ||||||||||| || Sbjct 1208 AACATAAAACCTATTAATGCGAAAGCACCGTGGAGAGCAACAAAAGCCCACAG 1156 >seq3 Length=29132933 Score = 214 bits (236), Expect = 2e-50 Identities = 370/531 (70%), Gaps = 10/531 (2%) Strand=Plus/Minus Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225 ||||||||||| | ||||| | |||| ||||| || || || | |||| | ||| Sbjct 2932298 CCCATCATATGAAGAGGGTTCAATTTCCAATTATGAAACCCTTGGAAAAAGATGATGAAC 2932239 Query 102226 CTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 102285 | |||||| || || |||||||| || ||||||||||||| || || || ||||| Sbjct 2932238 CGAAATATAGCCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGGA 2932180 Query 102286 TAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTAC 102345 || || ||||| ||| | ||||||||| || || |||||||| | || ||||| || Sbjct 2932179 TAAATTAGAAAGACAGAAATAAAAACAGCAATTGGACCAGAGAATGTTATTGCATTATAA 2932120 Query 102346 GGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCA 102405 || || | | || | | ||| | || |||||||| | ||| |||| || | | Sbjct 2932119 GGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACTTATTAATTCG 2932060 Query 102406 AATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAA 102465 || |||| ||||||||| |||||| |||| || || | | ||| ||| | ||| ||| Sbjct 2932059 AAAGCACTGTGGAGAGCAACAAAACCCCACAGACCGTCTAATTGACACCAAC-GACTAAA 2932001 Query 102466 -TCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGG 102524 |||||||| |||||||||||| || | || || |||||| | | | |||||| Sbjct 2932000 ATCTCCTTGTGCTTCAGGACCCACAATAATAACAA-AGAATGCGTTAAACTATTAGCAGG 2931942 Query 102525 CGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTC---AAGGTAACTAGACGCAAGCCC 102581 || || || ||| | || | | | | |||||| | | ||||| || | || Sbjct 2931941 AGTAGAAACTGCATCGGTTAAAAGACTGCAACCTTCTAAATAGGAACTA---GCCAATCC 2931885 Query 102582 GTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATA 102641 || |||||||| ||||| |||| || || || || | ||| ||||| | | || ||| Sbjct 2931884 ATGAGTATACCATGAAGTTACAAAAGTTGTACCTGTGAACCAACCCCCCAAAGAGAAATA 2931825 Query 102642 AGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATC 102692 ||| ||||| || | ||| ||||||||||| ||||| |||||||| || Sbjct 2931824 GGCACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACAAAGCGGTC 2931774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633429057610080