Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq10676 533 4e-147 seq3442 98.7 3e-16 >seq10676 Length=153368 Score = 533 bits (590), Expect = 4e-147 Identities = 698/964 (72%), Gaps = 2/964 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || |||||||| || || | |||||||| Sbjct 344 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 403 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| ||| |||||||| || || || || |||| | | | | | | ||| Sbjct 404 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 463 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| ||| | || | |||| |||| Sbjct 464 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 523 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||||||||| || ||||| || || | |||||||| | | ||| ||||| || || Sbjct 524 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 583 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| ||||||||||| ||||| |||||||| Sbjct 584 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 643 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||| |||||||| || |||| || | || || | | ||| || || || | Sbjct 644 TCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 703 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| ||| ||||||||| || | || || ||||| Sbjct 704 ATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACA 763 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| || ||||||||||| ||||||||||||||||| || Sbjct 764 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 823 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || || || || | |||||| ||||||||||| || || Sbjct 824 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 883 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| || || | | ||| |||||||| ||||| || |||||||| || || |||||| Sbjct 884 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 943 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | |||||||||||||| || ||||| ||| | Sbjct 944 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 1003 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | ||||| | || | |||| | ||||| |||||||| |||||| Sbjct 1004 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCAT 1063 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | ||||||||||| || || || || || | || || || | | Sbjct 1064 TCATCAACGGATGCAGCTTCCCAGATCGGATAAAAATGCAAACCAATAGCTGCAGAAGTA 1123 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| ||||| || || ||||| || || | || || |||| || ||||| Sbjct 1124 GGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 1183 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || ||| || |||||||||||| | || Sbjct 1184 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTT 1243 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATT 22429 |||| ||| ||| | |||||||| | || || |||||||| | ||||||||||| | Sbjct 1244 GCGGTCAATAAGGTA-GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 1302 Query 22430 AGTA 22433 |||| Sbjct 1303 AGTA 1306 >seq3442 Length=4740 Score = 98.7 bits (108), Expect = 3e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 21695 ACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGC 21754 ||| ||||| || || ||||||||||||||||| | || |||||||| ||||||||||| Sbjct 4365 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 4306 Query 21755 AACAATATTGTAAGTCTCTTCCTCTTGAC 21783 ||||| |||||||| |||| ||||||| Sbjct 4305 TACAATGTTGTAAGTTTCTTTTTCTTGAC 4277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146189464115280