Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 3e-12 >seq6 Length=53636577 Score = 86.0 bits (94), Expect = 3e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||| ||||| || ||||| ||||| || || || | ||||| ||||||||||| || Sbjct 23786790 TACCCTTTCTCTTGCCTCCTCCTTGGTCGACATAACGAGCAGTATCATTGAAAACCCGCA 23786731 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||||||||| | ||| | || ||| || |||| | | || | ||| | | | Sbjct 23786730 GCATTGGAACAATACCATTAGATTCTCCATTAGTGCCACGGATGTAACTTCCAGAAGCAC 23786671 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | |||| | || ||| || || ||||| |||| |||| | ||||| ||| Sbjct 23786670 GGATGTTGTGAACTGAAACACCTATACCCCCAGCTGATTTACTAATAACCGCACACTCTT 23786611 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | |||||| | ||||||| ||||||||| | ||||| Sbjct 23786610 TCAATGTATCATATATTCCTTCAATGCTATCATCCTTCAT 23786571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253007076016700