Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq10676 547 8e-151 seq3 167 3e-36 seq3905 116 4e-21 seq2 116 4e-21 seq813 84.2 3e-11 >seq10676 Length=153368 Score = 547 bits (606), Expect = 8e-151 Identities = 723/1000 (72%), Gaps = 2/1000 (0%) Strand=Plus/Plus Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092 || ||||||| ||| ||||||||||| ||||||||||| ||||| | |||||||||||| Sbjct 328 TGGAGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 387 Query 124093 TTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTT 124152 ||||||||| | ||| || | ||| | || |||| |||| || | | ||| | Sbjct 388 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 447 Query 124153 AGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGAT 124212 | |||||| ||||||||||| || ||||||||||| | |||||| ||||| || | || Sbjct 448 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 507 Query 124213 ACCCATAGAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACT 124272 ||| | || || ||||| | || ||| || || || | |||| |||||| || | | Sbjct 508 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 567 Query 124273 TCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGC 124332 | || |||||||| |||||| |||||||| | || ||||| |||||||| || || Sbjct 568 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 627 Query 124333 TACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTG 124392 ||| |||||||| |||||||||||||| ||||| | || || | || || || | Sbjct 628 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 687 Query 124393 CTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAA 124452 ||||| ||||| ||||| | | ||| || || | |||||||||||| || |||| Sbjct 688 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 747 Query 124453 AGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512 || || ||||| | || ||||| ||| |||||| || || ||||| |||||||| || Sbjct 748 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 807 Query 124513 CTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATC 124572 ||| || ||||| || | |||||||||||||||||| ||||| || || ||||||||||| Sbjct 808 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 867 Query 124573 AGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGG 124632 ||| || || ||||||| |||||| | ||||| ||||| ||||| | || || Sbjct 868 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 927 Query 124633 TGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTG 124692 |||||||| |||||| |||||||||||||| || | | | | |||||||||| Sbjct 928 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 987 Query 124693 TCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACC 124752 | ||||| || | | ||||| | ||||| | || | | | ||||||||| Sbjct 988 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1047 Query 124753 ACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCC 124812 ||| || || | |||||||||||| | ||| ||||||||||| || || || || | || Sbjct 1048 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGATAAAAATGCAAACC 1107 Query 124813 GATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAA-AG 124871 ||||| || | |||| || ||||| || || || ||||| || || ||||| || Sbjct 1108 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTA-AAGAAGAG 1166 Query 124872 AACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAA 124931 | || | || ||||| | || || || ||||| || ||||| || ||||| ||||| | Sbjct 1167 ATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGA 1226 Query 124932 CGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAA 124991 || ||| | | ||| || | |||| |||||||| | |||||||||||| |||| Sbjct 1227 TAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACACCAAACCATCCAA 1286 Query 124992 CATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 |||| | ||| | || |||| ||| | |||||| Sbjct 1287 TGTAAAGACGGTTTTCAGTACTAGTTATCCAGTTACAGAA 1326 Score = 376 bits (416), Expect = 3e-99 Identities = 706/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 32996 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 32937 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || |||||||| Sbjct 32936 ATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAA 32877 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 32876 AGTCTCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 32817 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | |||||||| || | || | || |||| | ||| | || || || Sbjct 32816 TAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACTGGTAC 32757 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || ||||| Sbjct 32756 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGA 32697 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 32696 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 32637 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 32636 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 32598 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || |||| | || | || |||| || || || Sbjct 32597 ATTTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCCGCGCCCAGTACACCAGCGAC 32538 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||||| || || || ||||| | || | ||| | Sbjct 32537 TCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAA 32478 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| ||||||||||| Sbjct 32477 TCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCTAGTGG 32418 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || ||||||| | || || || || | |||||||||||| ||| || || Sbjct 32417 ATAAATTAGAAAGACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 32358 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||||| | ||| || || | |||||||| | | ||| |||||||| | | | Sbjct 32357 AGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAATGC 32298 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 || | || || | || ||||| ||| ||||| || | ||| |||||||| || Sbjct 32297 GAAAGCACCGTGGAGAGCAACAAAAGCCCACAGACCGCCTAATTGACACCAACGAGTAAA 32238 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||||||||||||| ||||| || |||| | | ||| | | | | |||| Sbjct 32237 ATCTCCTTGTGCTTCAGGACCCCACAGTAACAACAAAGAATGCGCTAAACTATTAGCAGG 32178 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || ||||| || ||||| || || || || | ||| ||| || | ||||| Sbjct 32177 AGTAGAAACTGCAGCGGTTAAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATG 32118 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| || Sbjct 32117 AGTATACCATGAAGTTACAAAGGTTGTACCTGTGAACCAACCCCCCAAAGCGAAATAGGC 32058 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || || || || || ||| |||||| Sbjct 32057 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCA 31998 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 31997 GTCATCCATAATATCAAA 31980 >seq3 Length=29132933 Score = 167 bits (184), Expect = 3e-36 Identities = 380/563 (67%), Gaps = 14/563 (2%) Strand=Plus/Minus Query 123347 CCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATAA 123406 |||||||| |||| || |||||| | || || || ||||| | || | ||| | Sbjct 2932298 CCCATCATATGAAGAGGGTTCAATTTCCAATTATGAAACCCTTGGAAAAAGATGATGAAC 2932239 Query 123407 CGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGGA 123466 ||||| || || || ||||| || ||||| |||||||||| |||||| | ||| Sbjct 2932238 CGAAATATAGCCGCTACACCAAAACTAGGTGCAAAGAACCAACCAGATTGACCT-GAGGA 2932180 Query 123467 TAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTAA 123526 || || ||||||| | | || || || || | ||||||||| | ||| || ||| Sbjct 2932179 TAAATTAGAAAGACAGAAATAAAAACAGCAATTGGACCAGAGAATGTTATTGCATTATAA 2932120 Query 123527 GGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCCA 123586 |||| | ||| || || | |||||||| | | ||| |||| ||| | | | Sbjct 2932119 GGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATAAAACTTATTAATTCG 2932060 Query 123587 AAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAAT 123646 || | | || | || ||||| ||| ||||| | | ||| |||||||| || Sbjct 2932059 AAAGCACTGTGGAGAGCAACAAAACCCCACAGACCGTCTAATTGACACCAACGACTAAAA 2932000 Query 123647 GATCCTTGTGCTTCAGGTCCC-CAA-AGGAACATGAGACTATG---ACCCATTGCGTCAC 123701 ||||||||||||||| ||| ||| | |||| ||| | | | | ||| | Sbjct 2931999 TCTCCTTGTGCTTCAGGACCCACAATAATAACAA-AGAATGCGTTAAACTATT-----AG 2931946 Query 123702 CAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCT-CAAGATATGAAGATGCAATA 123760 |||| || || ||||| | ||||| ||| ||| ||| | | ||| ||| || | Sbjct 2931945 CAGGAGTAGAAACTGCATCGGTTAA-AAGACTGCAACCTTCTAAATAGGAACTAGCCAAT 2931887 Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 ||||| ||||||||||| || || || || || ||| ||||||||| || | || | | Sbjct 2931886 CCATGAGTATACCATGAAGTTACAAAAGTTGTACCTGTGAACCAACCCCCCAAAGAGAAA 2931827 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || |||||||| | || || ||||||||||| |||| || ||||| || || ||| | Sbjct 2931826 TAGGCACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACAAAGCGGTCCCTCCGT 2931767 Query 123881 AACCAGTCGTCAAGAACATCAAA 123903 |||||||| | || || | |||| Sbjct 2931766 AACCAGTCATTAATAATACCAAA 2931744 >seq3905 Length=4339 Score = 116 bits (128), Expect = 4e-21 Identities = 235/349 (67%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331 |||||| | || || || | || || ||||||||||| || |||| | || | || Sbjct 1502 TCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATAGCGCATAACAGAGCCGCGCCC 1443 Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391 |||| || || || |||||||| |||||||| |||||| | || || || ||||| Sbjct 1442 AGTACACCAGCGACTCCCATCATATGAAATGGGTTCAATATCCAATTATGAAACCCTTGG 1383 Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTG 123451 | || | ||| | ||||| || | || ||||| || || || |||||||||| Sbjct 1382 AAAAAGAGGATGAATCGAAATATAACCGCTACACCAAAACTAGGCGCAAAGAACCAACCA 1323 Query 123452 TGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAAT 123511 |||||||||||||| || ||||||| | || || || || | || ||||| Sbjct 1322 GATTGACCTAGTGGATAAATTAGAAAGACAGAAACAAAAACAGCAATTGGACCAAAGAAT 1263 Query 123512 GCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATG 123571 |||| ||| || ||||||| | ||| || || | |||||||| | | ||| Sbjct 1262 GCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGTTCAAATTGACGTAACATA 1203 Query 123572 AAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGAC 123620 |||||||| | | | || | || || | || ||||| ||| |||| Sbjct 1202 AAACCTATTAATGCGAAAGCACCGTGGAGAGCAACAAAAGCCCACAGAC 1154 >seq2 Length=43799612 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 14/212 (7%) Strand=Plus/Plus Query 139315 CTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTT 139374 |||| || || |||||||| || || ||||| || || ||||||||||| || ||||| | Sbjct 40938953 CTTGAGCAGTACAGATGTTGCTAGTGGCTTTATCCCTCCTAATATGCTGTTCCCTAGTCT 40939012 Query 139375 GTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC-------CACTGACTGACCTACA 139427 | | || | || |||| || |||| | || ||||||| ||| | | Sbjct 40939013 GCATAGCCA-----TACGCAGAGCTGGCTTCCCAGTAGAATCAACACTGAC--ACCAATA 40939065 Query 139428 ATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGA 139487 || || ||||| ||| |||||||||||| | | || || || || |||||||||||| Sbjct 40939066 ATCCTCCCAGGCATCATTCTCTTATACTCTCCCGAAGTAGCCAAAAACGCAGCATGAGGA 40939125 Query 139488 CCTCCGTATCCCATAGGAATACCAAACCTTTG 139519 || ||||| ||||| |||| ||||||||| || Sbjct 40939126 CCACCGTAACCCATCGGAACACCAAACCTCTG 40939157 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||| || |||||||| ||||| | ||||| || ||||||||||| Sbjct 40937174 AAATGGTGCTAAATGCTTCTTCACACCAATGGGACCCATTCCAGGCCCACCACCTCCATG 40937233 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 40937234 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 40937282 >seq813 Length=20179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 124033 TGTAGACTCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAAC 124092 || ||||||| ||| ||||||||||| ||||||||||| ||||| | |||||||||||| Sbjct 10641 TGGAGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 10700 Query 124093 TTCCAT 124098 |||||| Sbjct 10701 TTCCAT 10706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578921132663520