Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 seq8 122 1e-22 seq6 118 1e-21 seq4 102 1e-16 seq7 96.9 4e-15 >seq1 Length=26309735 Score = 147 bits (162), Expect = 3e-30 Identities = 303/446 (68%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||||||| | || ||||| | || ||| || | |||||| ||| Sbjct 2346292 GTGGAGTTTCTCAAGAAGCCTGAGAGGTTCACTGCTGTTGGCGCGAGGATCCCGAAAGGT 2346233 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || |||| ||| || ||||| ||||| || || | || ||||||||| ||| Sbjct 2346232 GTTCTCCTCGTTGGTCCTCCCGGTACTGGAAAAACACTGTTAGCAAAAGCCATCGCTGGT 2346173 Query 175357 GAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGG 175415 ||| | ||| || ||| | || | ||| | | | || || ||||||||||| || Sbjct 2346172 GAAGCTGGTGTGCCTTTCTTTTCAAT-CTCAGGTTCTGAGTTCGTTGAGATGTTTGTCGG 2346114 Query 175416 TGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTAT 175475 ||| ||||| ||||| || ||||| || ||| ||| || ||| || || || Sbjct 2346113 TGTTGGTGCTTCGAGGGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAATGCTCCGTGCAT 2346054 Query 175476 TGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCA 175533 |||||| | |||||||||||||| || || | ||| | | |||| | | | | Sbjct 2346053 TGTCTTTGTGGATGAGATTGATGCCGTCGGTAGGCAGAGAGGAACTGGAATCGGTGG--A 2345996 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | ||||||||||||||||| || |||| || || | || ||||||||||| ||||| Sbjct 2345995 GGTAATGACGAGAGAGAACAGACGCTTAACCAGCTCTTGACGGAGATGGATGGTTTTGAA 2345936 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCC 175653 | | ||||| | | || |||| || || || | | |||||| ||||| |||| Sbjct 2345935 GGTAACACTGGTGTGATCGTGGTTGCTGCAACCAACAGAGCGGATATTCTTGACTCCGCC 2345876 Query 175654 CTCCTTCGCCCGGGTCGTTTTGATCG 175679 || ||| | || || |||||||| || Sbjct 2345875 CTGCTTAGACCAGGCCGTTTTGACCG 2345850 >seq8 Length=29681327 Score = 122 bits (134), Expect = 1e-22 Identities = 295/444 (66%), Gaps = 2/444 (0%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| | || ||||| | || |||||| |||||| ||| Sbjct 964531 GTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCTCGGATCCCGAAAGGT 964472 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | ||| |||| ||| || ||||| || || || || | || ||||| || ||| Sbjct 964471 GTCCTCCTCGTTGGTCCTCCTGGTACTGGTAAAACTCTGTTAGCAAAGGCCATTGCTGGT 964412 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||| ||| Sbjct 964411 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTGGGT 964352 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || ||||| ||||| || ||||| || ||| ||| || ||| || || ||| Sbjct 964351 GTTGGTGCTTCGAGGGTCCGTGATCTTTTCAAAAAGGCCAAGGAGAATGCTCCGTGCATT 964292 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG-CCAGC 175535 |||||| | || ||||| ||||| || || | ||| | | |||| | | | || Sbjct 964291 GTCTTCGTGGACGAGATAGATGCTGTTGGTAGGCAGAGAGGGACTGG-GATCGGTGGAGG 964233 Query 175536 AAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAA 175595 ||||| |||||||| || || ||||||| || | || ||||||||||| ||||| Sbjct 964232 GAATGATGAGAGAGAGCAGACGCTTAATCAGCTCTTGACTGAGATGGATGGGTTTGAGGG 964173 Query 175596 TGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCT 175655 | | ||||| || | || |||| || || || | | ||||| ||||| ||| | Sbjct 964172 TAACACTGGTGTTATTGTGGTTGCTGCAACCAACAGAGCTGATATTCTTGACTCCGCGTT 964113 Query 175656 CCTTCGCCCGGGTCGTTTTGATCG 175679 || | ||||| || ||||| || Sbjct 964112 GCTGAGACCGGGGCGGTTTGACCG 964089 >seq6 Length=53636577 Score = 118 bits (130), Expect = 1e-21 Identities = 280/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||| ||| | || ||||| | || |||||| |||||| Sbjct 45675637 GAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCTCGGATCCCT 45675578 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | || || ||| || ||||| || ||||| || || || ||| ||| Sbjct 45675577 AAAGGTGTTCTGCTTATCGGTCCTCCTGGTACTGGGAAGACGCTGCTGGCGAAAGCTATC 45675518 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| || ||| || ||| | | | ||||| ||||||||| Sbjct 45675517 GCCGGTGAAGCTGGTGTGCCGTTCTTCTCCATCTCCGGGTCTGAGTTTGTTGAGATGTTT 45675458 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 || ||||| |||||| ||||| || ||||| || | | ||| || || || Sbjct 45675457 GTCGGTGTTGGTGCCTCGAGGGTCCGTGATCTTTTCAAGAAGGCCAAGGAGAACGCTCCT 45675398 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG-----CAGCGCT-GGT 175524 || |||||||| |||||||||| ||||| || || | |||| | ||| | ||| Sbjct 45675397 TGCATTGTCTTTGTTGATGAGATCGATGCTGTTGGTAGGCAAAGAGGGACAGGAATCGGT 45675338 Query 175525 GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGAT 175584 || || ||||| ||||||||||| || | || || || || || ||||||||| Sbjct 45675337 GG------AGGGAATGATGAGAGAGAACAGACTTTGAACCAGCTGCTAACTGAGATGGAT 45675284 Query 175585 GGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTT 175644 || ||||| | | ||||| || | ||| |||| || || ||| | | || || ||| Sbjct 45675283 GGGTTTGAAGGTAACACTGGTATCATCGTTGTTGCTGCAACCAATAGAGCAGACATTCTT 45675224 Query 175645 GA 175646 || Sbjct 45675223 GA 45675222 Score = 118 bits (130), Expect = 1e-21 Identities = 280/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||| ||| | || ||||| | || |||||| |||||| Sbjct 45685075 GAGGTGGTGGAGTTTCTGAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCTCGGATCCCT 45685016 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | || || ||| || ||||| || ||||| || || || ||| ||| Sbjct 45685015 AAAGGTGTTCTGCTTATCGGTCCTCCTGGTACTGGGAAGACGCTGCTGGCGAAAGCTATC 45684956 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| || ||| || ||| | | | ||||| ||||||||| Sbjct 45684955 GCCGGTGAAGCTGGTGTGCCGTTCTTCTCCATCTCCGGGTCTGAGTTTGTTGAGATGTTT 45684896 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 || ||||| |||||| ||||| || ||||| || | | ||| || || || Sbjct 45684895 GTCGGTGTTGGTGCCTCGAGGGTCCGTGATCTTTTCAAGAAGGCCAAGGAGAACGCTCCT 45684836 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG-----CAGCGCT-GGT 175524 || |||||||| |||||||||| ||||| || || | |||| | ||| | ||| Sbjct 45684835 TGCATTGTCTTTGTTGATGAGATCGATGCTGTTGGTAGGCAAAGAGGGACAGGAATCGGT 45684776 Query 175525 GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGAT 175584 || || ||||| ||||||||||| || | || || || || || ||||||||| Sbjct 45684775 GG------AGGGAATGATGAGAGAGAACAGACTTTGAACCAGCTGCTAACTGAGATGGAT 45684722 Query 175585 GGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTT 175644 || ||||| | | ||||| || | ||| |||| || || ||| | | || || ||| Sbjct 45684721 GGGTTTGAAGGTAACACTGGTATCATCGTTGTTGCTGCAACCAATAGAGCAGACATTCTT 45684662 Query 175645 GA 175646 || Sbjct 45684661 GA 45684660 Score = 98.7 bits (108), Expect = 1e-15 Identities = 256/384 (67%), Gaps = 20/384 (5%) Strand=Plus/Plus Query 177549 GAAGCACATTTCAACAAACTGCCTC-ACAGAGTGTGTCTCCCCCGTCGCGACAACATATT 177607 |||| ||| | || ||||| |||| || | ||||| |||| | || || ||||| || | Sbjct 11901096 GAAGGACACGTTAAGAAACT-CCTCGACGGTGTGTGACTCCTCAGTTGCCACAACGTAGT 11901154 Query 177608 CATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGAC 177667 |||| | | || || || ||||| |||||||| || || || |||||| || | Sbjct 11901155 CATCTGGTTTCTCCTGCTGCAGCATCAGCCACATTGCCTCCACGTAGTCCCCTGCGAACC 11901214 Query 177668 CCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCT-CACCTTTCACA 177726 |||||||||| | || | | ||| || || | || || | ||| || | | | Sbjct 11901215 CCCAGTCTCTCGACGCCTGTATGTTTCCCAGG---AAGAGCTTTGTCTGCAGC---CCGA 11901268 Query 177727 ATTTGTTTGACGCCATCA-----GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCG 177781 ||| | | ||| || || ||| | || || |||| | ||||| | | Sbjct 11901269 CCTTGATCCTCCCCAAGGCCCTTGTTATTTTCCTAGTCACGAAGTTCTCGCCTCGGCGGG 11901328 Query 177782 GTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAAT 177841 |||| ||||||||||| ||||| ||| |||||| || | || || | ||||| |||| Sbjct 11901329 GTGACTCGTGGTTGAAAAGGATCCCGTTGCAGGCGTAGAGGCCGTATGCTTCTCTGTAA- 11901387 Query 177842 TTTTGAC---GAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGA 177898 ||||| | |||||||||||| | ||||||| | ||||| |||| |||| | Sbjct 11901388 --TTGACAGTGTACCAGTGAGCGGCGACTTTGGAGGCAGCATAGGGAGATCTGGGGTGAA 11901445 Query 177899 AGGGTGTCTCCTCAGTTTGTGGAG 177922 | || || ||||| ||| |||| Sbjct 11901446 ACGGAGTGGTCTCAGATTGGGGAG 11901469 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 76757 ACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 76816 || |||||||| || ||| || | || |||| ||||||| |||||||| ||||| Sbjct 23788875 ACTGTGTGGGAGATTAAGCAGAGAACAGTTGTTGATATGGCCGTTGATCGTGGATGCTTC 23788934 Query 76817 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGA-AAGTCCAACGATGTCCAAGCTCTC 76875 ||||||||||| |||||| ||||| || |||||| || ||||| || |||| ||| | Sbjct 23788935 ATTGATCAAAGCCAAAGTTTGAATATACACATGGACAAACCCAACTTTG-CCAAACTCAC 23788993 Query 76876 TTCTATGCATATGTACGCGTGGAAACAGG 76904 ||| | || | || | |||||| ||| Sbjct 23788994 TTCCTTACACTTCCACACTTGGAAAAAGG 23789022 >seq4 Length=50002108 Score = 102 bits (112), Expect = 1e-16 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | | ||||||||| ||||||| ||||| ||| | ||| Sbjct 15358903 GCCATCGAGACCATCCCCTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGAC 15358962 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | |||| | ||||| ||| | | | || || || || ||||| || |||||| Sbjct 15358963 GGA---TCTCAGACTTTCGCGGAGAGGATCGTCGCCTTCGCCTGCGTGGAAGGGATCTTC 15359019 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||| | || | ||| | |||||||| || |||||||| || || Sbjct 15359020 TTCTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCTGGTCTG 15359079 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 |||||| || || || || || |||| ||||| || ||| Sbjct 15359080 ACCTTCTCCAACGAGCTGATCTCGAGAGACGAGGGGCTTCAC 15359121 >seq7 Length=27187321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 212/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||| ||| ||| || |||| |||| || || || || ||||| || Sbjct 11257887 GGCGCCAAGATTCCCAAAGGGTGTCTCCTCGTGGGTCCCCCCGGGACTGGTAAGACTCTG 11257828 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | || |||| | || || ||| | ||| || ||| || ||| | || | | Sbjct 11257827 TTAGCTAGAGCTGTTGCTGGAGAAGCCGGTGTGCCGTTCTTCTCCTGCGCGGCTTCTGAG 11257768 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||| | || || ||||||||||| |||||| | ||| | || || | || Sbjct 11257767 TTTGTTGAGCTTTTCGTCGGTGTGGGTGCGTCTAGGGTTAGGGATTTGTTCGAGAAGGCT 11257708 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || ||||| || || |||||||||||||| ||||| | ||| | Sbjct 11257707 AAGGCCAAGGCGCCTTGCATTGTTTTTATCGATGAGATTGATGCTGTGGGGAGGCAGAGA 11257648 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | ||||| ||| | | || ||||| ||||| || || || |||||||| || | | Sbjct 11257647 GGAGCTGGGATGGGAGG--AGGGAATGATGAGAGGGAGCAGACGATTAATCAGCTCTTGA 11257590 Query 175574 CCGAGATGGATGGCTT 175589 | ||||||||||| || Sbjct 11257589 CTGAGATGGATGGGTT 11257574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596489987786880