Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq10676 524 9e-144 seq2 84.2 3e-11 >seq10676 Length=153368 Score = 524 bits (580), Expect = 9e-144 Identities = 713/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 331 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 390 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 391 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 448 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 449 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 508 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 509 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 568 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 569 CGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 627 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || |||||||||||||| || | || || | || ||| || | Sbjct 628 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 687 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || |||||||| ||||||||||| || || Sbjct 688 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 747 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 748 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 807 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 808 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 867 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || || ||||||| ||| || | ||||| || || |||||| | || || Sbjct 868 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 927 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| | ||| | | ||||||| Sbjct 928 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 987 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 988 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 1047 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654 ||||| || | ||| ||||| | | ||||||||||| || ||||| || || || || Sbjct 1048 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGATAAAAATGCAAACC 1107 Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 |||||| |||| |||| | ||||| || || || |||||||| || | | || Sbjct 1108 AATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGA 1167 Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774 || | |||||||||||||||||| || ||||| || || ||||||||||| ||||| | Sbjct 1168 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1227 Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834 ||||| | || || | || ||| ||||||||| | ||| |||||||| || | Sbjct 1228 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACACCAAACCATCCAAT 1287 Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | ||||| || | ||| Sbjct 1288 GTAAAGACGGTTTTCAGTACTAGTTATCCA 1317 >seq2 Length=43799612 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 8623 GCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCA 8682 ||||||||||| | | ||| || || || |||||||| |||| ||| | ||| Sbjct 8463763 GCAGCTTCCCAGTTTGAATAAAAATGCAAACCAATAGCTGCAGAAGTATGAATAATGGCA 8463704 Query 8683 CCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCG 8742 || || || || | ||||||||| | | || | | || |||||||| |||||| || Sbjct 8463703 CCTGAAATAATATCGTTTCCATAAAGAAGAGATCGAGAAATAGGTTCACAAATACCATCA 8463644 Query 8743 ATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAG 8802 | ||| || || ||| ||||||| ||||| | ||||| || | | | | || ||| Sbjct 8463643 AAATCTACTGGAGGAACAGCAATGAATGCGATAATAAAAACAGAAACTACGGTCAATAAG 8463584 Query 8803 CAAGGAATCATTAGAACTCCAAACCAACC 8831 | | ||||| | ||| |||||||| || Sbjct 8463583 ATAAGGATCATCAAAACACCAAACCATCC 8463555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615780213162720