Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq10676 637 5e-178 seq3905 230 3e-55 seq3 194 2e-44 seq10675 95.1 1e-14 seq6 89.7 6e-13 seq3442 87.8 2e-12 >seq10676 Length=153368 Score = 637 bits (706), Expect = 5e-178 Identities = 739/996 (74%), Gaps = 0/996 (0%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | || || || | |||||||| || | || ||||||||| | Sbjct 1327 CTTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1268 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887 ||||||||| || | ||| | |||||| | || || |||| ||||| |||||||| Sbjct 1267 GATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1208 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || |||||||| || |||| ||||| | || || ||||| Sbjct 1207 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1148 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 || || || ||||| || |||| |||| || |||||| | || || ||||| || Sbjct 1147 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGAT 1088 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 ||||||||| ||||| |||| |||||||| || ||||||||||||| |||| |||| Sbjct 1087 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1028 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | ||||| | |||| | | || |||||||||||||||||||| || ||| Sbjct 1027 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 968 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 ||| ||||||||||| ||||| |||||| || ||||| || || || ||||| | ||| Sbjct 967 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 908 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 || ||| | | || || | |||||||| ||||| ||||||| ||||| || ||||| Sbjct 907 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 848 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 ||| || || ||||||| ||| | || ||||| ||||||||||| ||||| ||||| || Sbjct 847 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 788 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 || || ||| | || || ||||| ||||| || ||| | |||||||||||||| || Sbjct 787 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 728 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 |||||| |||||| | | | || || || || |||| ||||| || | || Sbjct 727 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 668 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 |||| ||||| |||||||||||||| |||||||| ||||| ||||| ||||| || || Sbjct 667 GTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 608 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 || |||||||||||||| ||| |||||||| || || || || || |||||| | || Sbjct 607 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 548 Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607 || ||||| || || || || ||||| || || | || | || ||||| ||||| Sbjct 547 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 488 Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667 ||| || |||||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 487 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 428 Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727 ||||| ||| || ||||||| ||| || |||||||||||||||||||| ||||| || Sbjct 427 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 368 Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCTGCTGAGTC 166763 ||||||||||| || ||||| ||||||| |||||| Sbjct 367 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 542 bits (600), Expect = 3e-149 Identities = 735/1020 (72%), Gaps = 6/1020 (1%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| || || |||||||| || |||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| | ||| | || |||||| | || || || || || Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTC 167191 || || ||||||||||||||| | || || | ||| | || ||| || ||| Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCC--TATTTAGAAGGTTGCAATTTTT 32157 Query 167192 TTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGG 167251 | || || |||||| |||||| || || | | | |||||||| | | || |||| Sbjct 32158 TAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGG 32217 Query 167252 GTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTG 167311 |||||||| | ||||| ||||| | ||| ||| | || || || |||||||||| Sbjct 32218 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTG 32277 Query 167312 TGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTC 167371 | || |||||||| || || || | || ||||| ||| | || || ||||||||||||| Sbjct 32278 TTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 32337 Query 167372 GC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTC 167430 | ||| | | | || || || ||||| || || ||||||||||| |||||||| || Sbjct 32338 GATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 32396 Query 167431 GTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTC 167490 ||| || || || | ||||| || |||||| | ||||||||||| || || Sbjct 32397 GTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 32456 Query 167491 GGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTG 167550 || || || || || || |||||| ||||||| ||||||| || || || |||||| || Sbjct 32457 GGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 32516 Query 167551 AATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATC 167610 || ||||||||||||||||| || || ||| | ||||| | || || | | || || Sbjct 32517 AACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATT 32576 Query 167611 CATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAG 167670 ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || || Sbjct 32577 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 32636 Query 167671 GCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGG 167730 || || | | ||||| | ||||| |||||||||||||| || || ||||| || ||| Sbjct 32637 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 32696 Query 167731 TCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTC 167790 || || ||||| || ||||||| ||| ||||| ||| | ||||||||||||||||| Sbjct 32697 TCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 32756 Query 167791 GTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTT 167850 || || || | || | |||| | |||| | | ||||| ||| | || || Sbjct 32757 GTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTA 32816 Query 167851 CGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACT 167910 ||||| || || |||||||| || || ||| | || ||||| ||||| || ||||| ||| Sbjct 32817 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACT 32876 Query 167911 TTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGAT 167970 |||||||||||||| || ||| | || |||||| |||| || ||| | || || ||| Sbjct 32877 TTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGAT 32936 Query 167971 CAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 || |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 32937 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 32996 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 108047 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 107988 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 107987 GGTTCGAATCCTACTTGGGGAG 107966 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 128492 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 128551 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 128552 GGTTCGAATCCTACTTGGGGAG 128573 >seq3905 Length=4339 Score = 230 bits (254), Expect = 3e-55 Identities = 301/414 (73%), Gaps = 2/414 (0%) Strand=Plus/Plus Query 167299 CTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAG 167358 || ||||||||||| || |||||||| || || || | || ||||| ||| | || || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 167359 TTTGAACTTGCTCGC-CTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCC 167417 |||||||||||||| ||| | | | || || || ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 167418 TATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTT 167477 |||||||| || ||| || || || | ||||| || |||||| | |||||||| Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 167478 TGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCA 167537 ||| || || || || || | || || |||||| ||||||| ||||||| || || Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 167538 CAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATT 167597 || |||| | |||| ||||||||||||||||| || || ||| | ||||| | || | Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 167598 GCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGC 167657 | | | || || ||||||| ||| ||||| |||||||| | |||||||||||| || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 167658 AAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGT 167711 ||| || || || || | ||||| | ||||| |||||||||||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGT 1568 >seq3 Length=29132933 Score = 194 bits (214), Expect = 2e-44 Identities = 380/549 (69%), Gaps = 12/549 (2%) Strand=Plus/Plus Query 167027 ATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTC 167086 |||||||| | ||||| || ||||||||||| || |||||||| || | || |||| Sbjct 2931757 ATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTC 2931816 Query 167087 CCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGT 167146 | ||| ||| | || | || |||||| | || || || ||||| || || |||| Sbjct 2931817 CTTGTGCCTATTTCTCTTTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGT 2931876 Query 167147 ATACTCATGGACTCGC--GTCCAGTTATCTTG-AGGGTGCGAACTTTCTTACTGCGGCAG 167203 ||||||||||| | || || | ||| | | ||| ||| |||| | || | |||| Sbjct 2931877 ATACTCATGGATTGGCTAGTTC--CTATTTAGAAGGTTGCAGTCTTT-TAACCGATGCAG 2931933 Query 167204 TTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTC 167263 || |||||| || || | | |||||||| || || | |||||||||| | | Sbjct 2931934 TTTCTACTCCTGCTAATAGTTTAACGCATTCTTT-GTTATTATTGTGGGTCCTGAAGCAC 2931992 Query 167264 AAGGGGA-TTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 167322 |||| || ||| ||| | ||| ||| | | || || |||| |||||| || |||||| Sbjct 2931993 AAGGAGATTTTAGTC-GTTGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCAC 2932051 Query 167323 GGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCG-CCTGATTGG 167381 | || || | | || |||| ||| | || || |||||||||||||| ||| || Sbjct 2932052 AGTGCTTTCGAATTAATAAGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCA 2932110 Query 167382 TATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTT 167441 | || || || ||||| || | ||||||||||| |||||||| || || || || Sbjct 2932111 ATTGCGACCTTATAATGCAATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTT 2932170 Query 167442 CCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGC 167501 || | ||||| | |||||| | ||||||||||| || || || || || || Sbjct 2932171 TCTAATTTATCCTC-AGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGC 2932229 Query 167502 CATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCA 167561 || || || ||| || |||| ||||||| || || || |||| | |||| || |||| Sbjct 2932230 TATATTTCGGTTCATCATCTTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCA 2932289 Query 167562 TATGATGGG 167570 ||||||||| Sbjct 2932290 TATGATGGG 2932298 >seq10675 Length=258426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 206398 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 206339 Query 18179 GGTTCAAATCCTACCTGGGGAG--TTGTT 18205 ||||| |||||||| ||||||| ||||| Sbjct 206338 GGTTCGAATCCTACTTGGGGAGATTTGTT 206310 >seq6 Length=53636577 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 11756829 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 11756770 Query 18179 GGTTCAAATCCTACCTGGG 18197 ||||| |||||||| |||| Sbjct 11756769 GGTTCGAATCCTACTTGGG 11756751 >seq3442 Length=4740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 166441 CAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTC 166500 |||||| ||||||| |||||||| ||||| ||||| ||||| || || || ||||||||| Sbjct 4279 CAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTC 4338 Query 166501 CAATACGCTTCATTCAACAACTCCCG 166526 ||||| ||| |||||||| || || Sbjct 4339 CAATATGCTAGTTTCAACAATTCTCG 4364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561173101454400