Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq10676 533 4e-147 seq3442 98.7 3e-16 >seq10676 Length=153368 Score = 533 bits (590), Expect = 4e-147 Identities = 698/964 (72%), Gaps = 2/964 (0%) Strand=Plus/Minus Query 41254 TACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG- 41312 |||| | ||||||||||| | |||||||| || || | |||||||| | ||| ||| Sbjct 1306 TACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGA 1248 Query 41313 CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAA 41372 |||| || | |||||||||||| || ||| || || || || || || ||||| | Sbjct 1247 CCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTA 1188 Query 41373 TCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCG 41432 | || ||||| || |||| || || | || || ||||| || || ||||| ||| | Sbjct 1187 TTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTA 1128 Query 41433 TTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTG 41492 |||| | | || || || | || || || || || ||||||||||| | ||| Sbjct 1127 TTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTG 1068 Query 41493 ATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCG 41552 |||||||||| |||||||| ||||| | |||| | || | ||||| | |||| | Sbjct 1067 ATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTG 1008 Query 41553 TCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGA 41612 | | ||| ||||| || |||||||||||||| | || || || ||| | || |||| Sbjct 1007 TAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 948 Query 41613 TCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGT 41672 | |||||| || || |||||||| || ||||| |||||||| ||| | | || || Sbjct 947 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAA 888 Query 41673 TTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACA 41732 |||| || || ||||||||||| |||||| | || || || || || ||||||| | Sbjct 887 TTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTA 828 Query 41733 TGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGG 41792 || | || ||||||||||||||||| ||||||||||| || ||||||||| | ||||| | Sbjct 827 TGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 768 Query 41793 CCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCAC 41852 | || ||||| || || | || ||||||||| ||| |||| || || Sbjct 767 CTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTT 708 Query 41853 TCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGG 41912 | || | || || || ||| | | || || | || |||| || |||||||| | Sbjct 707 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAAGAAG 648 Query 41913 AAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATG 41972 |||| |||||||| ||||| ||||||||||| |||||||| || | ||||||||||||| Sbjct 647 AAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATG 588 Query 41973 CTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTA 42032 |||| || || ||||| ||| | | |||||||| | || || ||||| || ||||||| Sbjct 587 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTA 528 Query 42033 TTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTA 42092 |||||||| |||| | || | ||| |||||||||||| | ||||||||||| || | Sbjct 527 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 468 Query 42093 ACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACC 42152 ||||||| | | | | | | |||| || || || || |||||||| ||| |||||| Sbjct 467 ACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACC 408 Query 42153 GTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACC 42212 |||| |||||||| | || || |||||||| || || || ||||||||||| || |||| Sbjct 407 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACC 348 Query 42213 TTGC 42216 | || Sbjct 347 TAGC 344 >seq3442 Length=4740 Score = 98.7 bits (108), Expect = 3e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 41904 GTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCT 41963 ||||||| |||| |||||||| ||||| ||||||||||| |||||||| || | |||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 41964 TCCAATATGCTAGCTTTAATAATTCCCGT 41992 ||||||||||||| || || ||||| ||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCTCGT 4365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146195863303904