Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq10676 542 8e-150 >seq10676 Length=153368 Score = 542 bits (600), Expect = 8e-150 Identities = 717/995 (72%), Gaps = 0/995 (0%) Strand=Plus/Plus Query 40521 GACTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCC 40580 |||||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| |||||| Sbjct 332 GACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCC 391 Query 40581 ATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG 40640 ||||| || | | ||||| || ||||||||||||| ||| || || | | Sbjct 392 ATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTA 451 Query 40641 TCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCC 40700 || |||||||| ||||| || || |||||||| ||||| |||||||||||| ||||| Sbjct 452 TCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCT 511 Query 40701 ATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGG 40760 | | |||| ||| || || | ||||| |||| | | ||||| |||| | ||| Sbjct 512 AAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGA 571 Query 40761 CTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACG 40820 ||||||||| ||||||||| || || | || ||||| |||||||| |||||||| Sbjct 572 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACA 631 Query 40821 ATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCC 40880 ||||| ||||| || |||| ||||| || | ||||| | || |||||| |||| Sbjct 632 ATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATTTTCT 691 Query 40881 GTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 ||||| |||| || | ||||| || | || ||||||||| ||| | | Sbjct 692 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAG 751 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || || || | ||| || ||||||||||| ||||||||||| || Sbjct 752 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 811 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| Sbjct 812 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 871 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 ||| || ||||| | ||| || | ||||| ||||| ||| |||| | |||||| Sbjct 872 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 931 Query 41121 GTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTA 41180 | ||||| ||| ||||| || | |||||| || | | | ||||||||||| | | Sbjct 932 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 991 Query 41181 CCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCG 41240 || || ||||| || | ||||||||| | ||||| |||| ||| || || ||| Sbjct 992 CCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCG 1051 Query 41241 TTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATT 41300 ||||||||||| || || | | | ||||||||||| || || ||||| | || || Sbjct 1052 TTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGATAAAAATGCAAACCAATA 1111 Query 41301 GCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCG 41360 || ||| | |||| | || || || ||||||||||| ||||| | | || || Sbjct 1112 GCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCA 1171 Query 41361 GAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATG 41420 ||||| || ||||| || ||||| |||||||| || || || || || || ||||| || Sbjct 1172 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATA 1231 Query 41421 AAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTAT 41480 ||| | || || || | ||| | |||||||| | ||||||||||| || | ||| Sbjct 1232 AAAACGGAAGTTGCGGTCAATAAGGTAGGAATCATCAAAACACCAAACCATCCAATGTAA 1291 Query 41481 AGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || ||||| || || ||||| | ||||||||| || Sbjct 1292 AGACGGTTTTCAGTACTAGTTATCCAGTTACAGAA 1326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143684181768984