Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq10676 605 3e-168 seq2 96.9 4e-15 seq3442 87.8 2e-12 seq813 87.8 2e-12 >seq10676 Length=153368 Score = 605 bits (670), Expect = 3e-168 Identities = 740/1004 (74%), Gaps = 22/1004 (2%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 ||||||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 331 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 390 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 391 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 447 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 448 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 507 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 508 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 567 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||||||||| || || || || || |||||||| Sbjct 568 ACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 627 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| |||| || | || || || | Sbjct 628 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTACCCTTCATTAGCAGATTCATT 687 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | |||||| |||||||||||||| || Sbjct 688 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAG 747 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 748 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 807 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 808 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 867 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| |||||||| | || |||| |||||| ||||| || || | || || Sbjct 868 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 927 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 928 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 987 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 988 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 1044 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 ||||| || || | ||| ||||| | | ||| ||||||||||| ||||| || || | Sbjct 1045 ACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGATAAAAATGCAA 1104 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 ||| || || ||| |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 1105 ACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAG 1164 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 1165 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 1224 Query 68243 AATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || || | |||| ||| | | ||| |||||||||||| ||||| ||||| Sbjct 1225 GATAATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGAATCATCAAAACACCAAACCA 1281 Query 68300 ACCAACATAGATGCGATTGTCA--ACTGAGGTGACCCAGTTACA 68341 |||| || | || || ||| ||| || | ||||||||| Sbjct 1282 TCCAATGTAAAGACGGTTTTCAGTACT--AGTTATCCAGTTACA 1323 >seq2 Length=43799612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68069 ATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGAT 68128 ||| || | ||| ||||| | | ||| ||||||||| | | ||| || || | ||| || Sbjct 8463788 ATTGTATAGCCATTCATCAACAAATGCAGCTTCCCAGTTTGAATAAAAATGCAAACCAAT 8463729 Query 68129 TGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACC 68188 || ||| || ||| || ||||| ||||| || | ||| || || | || || | Sbjct 8463728 AGCTGCAGAAGTATGAATAATGGCACCTGAAATAATATCGTTTCCATAAAGAAGAGATCG 8463669 Query 68189 TGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGAT 68248 | || |||||| | |||||||| | ||| |||||||| | ||||||||||| || || Sbjct 8463668 AGAAATAGGTTCACAAATACCATCAAAATCTACTGGAGGAACAGCAATGAATGCGATAAT 8463609 Query 68249 GAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || || || | | | ||| | | |||||||| ||||| ||||| |||| Sbjct 8463608 AAAAACAGAAACTACGGTCAATAAGATAAGGATCATCAAAACACCAAACCATCCAA 8463553 >seq3442 Length=4740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 || ||||||||| ||||| ||||||||||| || || || || || |||||||| ||| Sbjct 4361 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACA 4302 Query 67650 ATGTTGTAAGTCTCTTCTTCTTG 67672 ||||||||||| |||| |||||| Sbjct 4301 ATGTTGTAAGTTTCTTTTTCTTG 4279 >seq813 Length=20179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 ||||||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 10644 AGACTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 10703 Query 67409 CAT 67411 ||| Sbjct 10704 CAT 10706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566871540896160