Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 8e-14 seq7 86.0 1e-11 seq5 84.2 4e-11 >seq9 Length=38354807 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| || | ||||| ||| || ||||| ||||| | | || || || || Sbjct 21327165 ACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCGAGAGTCCTGCCGTCCTCG 21327224 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | || ||||||||||| || || ||||| || || ||||| || || || || ||||| Sbjct 21327225 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTTGTCTTGG 21327284 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | ||| | ||| ||| || ||||| ||||||||| || || || || || Sbjct 21327285 ATCTTAGCTTTGACATTATCAATGGTGTCGGAGCTCTCAACTTCGAGGGTGATTGTCTTT 21327344 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || ||||| || ||||| Sbjct 21327345 CCGGTTAGTGTCTTGACAAAGATCTGCAT 21327373 >seq7 Length=27187321 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| | || || ||||| | || | ||| || || || |||||| Sbjct 640341 ATGCCACCTCTCAACCTGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 640400 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | ||||| ||||| || || | ||||| || || ||| Sbjct 640401 GCCAAGGTACGTCCATCCTCGAGCTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGA 640460 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || || | || | || || || ||||| ||| Sbjct 640461 GGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCG 640520 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || ||||| || || |||||||| Sbjct 640521 ACTTCGAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCAT 640570 >seq5 Length=45943323 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || || || | || || ||||||| || | |||||| || || ||||| Sbjct 16837805 ATACCTCCCCTTAACCTCAGAACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 16837864 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | ||| || | |||||||||| || || || ||||| ||||| | Sbjct 16837865 GCCAAGGTGCGACCATCCTCAAGCTGTTTTCCGGTGAAGATCAACCTCTGCTGATCCGAT 16837924 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || || |||| || | ||| || || || ||| Sbjct 16837925 GGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGCTCTCC 16837984 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 || || || || || || || || || || ||||| || ||||| ||||| || || Sbjct 16837985 ACCTCGAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCATCTTCTT 16838040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899534341120320