Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9 102 1e-16 seq7 89.7 8e-13 seq3 87.8 3e-12 >seq9 Length=38354807 Score = 102 bits (112), Expect = 1e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| |||||||| || || || ||||| || || || || || Sbjct 21303376 ATGCAGATTTTCGTTAAGACATTGACCGGCAAGACCATTACTTTGGAGGTGGAGAGCTCC 21303317 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || ||||| || || || || |||||||| || Sbjct 21303316 GACACCATTGATAATGTCAAAGCTAAGATCCAAGACAAGGAGGGTATCCCTCCAGACCAG 21303257 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| || ||| ||| | | || || | Sbjct 21303256 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGACTACA-- 21303199 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 ||||||||| ||| | || ||||| || ||||| Sbjct 21303198 ATATCCAAAAGGAGTCTACACTTCACTTGGTGTT 21303165 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | || ||||| || || || | ||||| || || Sbjct 21327373 ATGCAGATCTTTGTCAAGACACTAACCGGAAAGACAATCACCCTCGAAGTTGAGAGCTCC 21327314 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || ||||| || || || || |||||||| || Sbjct 21327313 GACACCATTGATAATGTCAAAGCTAAGATCCAAGACAAGGAGGGTATCCCTCCAGACCAG 21327254 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| ||||||||||| || ||| ||| | | || || | Sbjct 21327253 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGGACTCTCGCTGACTACA-- 21327196 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 ||||||||| ||| | || ||||| || ||||| Sbjct 21327195 ATATCCAAAAGGAGTCTACACTTCACTTGGTGTT 21327162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || ||||| |||||||||||||| |||| || || || Sbjct 21328057 ATGCAGATCTTCGTTAAGACCTTGACGGGAAAAACTATTACCCTAGAGGTGGAGAGCTCC 21327998 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| || || || || || || || || || || || || Sbjct 21327997 GACACCATTGACAACGTGAAAGCAAAGATCCAGGACAAGGAGGGGATCCCACCGGACCAG 21327938 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || || ||||| | |||||| |||||||| ||||| ||||||| Sbjct 21327937 CAGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCAGAACT 21327893 >seq7 Length=27187321 Score = 89.7 bits (98), Expect = 8e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 155895 AACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATT 155954 ||||| ||| || || || ||||| ||||| || ||||| || || || || ||||| Sbjct 456554 AACGTTAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTCCCGATCAGCAGAGGTTGATC 456613 Query 155955 TATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAG 156014 | ||||||||||||||||||||| ||| ||| | | ||||| || || ||||||| Sbjct 456614 TTCGCCGGTAAGCAGCTCGAAGATGGCAGGACTCTTGCTGATTACAACATCCACAAAGAG 456673 Query 156015 GCGACGCTTCAT 156026 | || |||||| Sbjct 456674 TCCACTCTTCAT 456685 >seq3 Length=29132933 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| ||||| ||||| || || || || || || Sbjct 2316776 ATGCAGATCTTTGTCAAGACATTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCC 2316717 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||| || || ||||| || || || || || || || Sbjct 2316716 GACACTATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAG 2316657 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| ||||||||||| ||| Sbjct 2316656 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGAT 2316621 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || |||||||| ||||| ||||| || || || || || || Sbjct 2324571 ATGCAGATCTTTGTCAAGACATTGACCGGAAAGACTATCACTTTGGAGGTGGAGAGCTCC 2324512 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||| || || ||||| || || || || || || || Sbjct 2324511 GACACTATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAG 2324452 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| ||||||||||| ||| Sbjct 2324451 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGAT 2324416 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| |||||||| || || || || || Sbjct 16258624 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGCTCG 16258565 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| || || || || || |||||||| ||||| || || Sbjct 16258564 GATACTATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAG 16258505 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | || || ||||||||||| ||| | || || | ||||| || Sbjct 16258504 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCTGATTACAAC 16258445 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| ||||| || || Sbjct 16258444 ATCCAGAAGGAGTCGACCCTTCACTTGGT 16258416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731774331681600