Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7 104 5e-17 seq1376 95.1 2e-14 >seq7 Length=27187321 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | ||| | |||| |||||| || || || ||| Sbjct 639885 ATGCCACCTCTGAGTCGAAGCACAAGATGCAGCGTAGACTCTTTCTGAATGTTGTAGTCA 639944 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| |||| || ||||| |||||||| | ||||| || || ||| Sbjct 639945 GCTAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGT 640004 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || |||||||| || || ||| || || ||| || | ||||| || Sbjct 640005 GGGATACCCTCTTTATCCTGGATCTTAGCCTTGACGTTATCAATGGTGTCTGAGCTCTCA 640064 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||||||| || | || || | ||| || ||||| Sbjct 640065 ACCTCCAAAGTAATGGTTTTACCGGTGAGGGTCTTGACAAAGATTTGCAT 640114 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | || | || | ||| || ||| || || ||| Sbjct 640113 ATACCACCACGAAGACGCAAGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCA 640172 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || ||||||||||| || | ||||| ||||| || Sbjct 640173 GCGAGCGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGATCCGGA 640232 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||| || || ||||| |||| || || || Sbjct 640233 GGGATGCCTTCCTTGTCCTGTATCTTCGCCTTGACATTGTCAATAGTGTCGGAGCTCTCA 640292 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || || || || | || |||||||| Sbjct 640293 ACCTCGAGAGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAGATCTGCAT 640342 >seq1376 Length=11974 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | || || || || | ||| | |||||| ||| || || |||| Sbjct 9989 CCACCCCTAAGCCTCAAGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGCG 9930 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | |||||| ||||||||||||| ||||||||||| |||||| Sbjct 9929 AGCGTTCGGCCATCCTCTAGTTGTTTCCCAGCAAAGATTAGCCTCTGTTGATCTGGTGGT 9870 Query 192430 ATTCCTTCTTTATCTTG 192446 || || ||||| || || Sbjct 9869 ATCCCCTCTTTGTCCTG 9853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984345336672600