Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9284 123 7e-23 >seq9284 Length=2216 Score = 123 bits (136), Expect = 7e-23 Identities = 280/413 (68%), Gaps = 20/413 (5%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || || || || | ||| || ||| || Sbjct 559 TAAACCCGTCCATCTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGTTCGTCGTTTCCAC 618 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| || || | |||||||||||||| || |||||||| | Sbjct 619 CTCCTAAA----CCGGTTC-CTC-TTATTCTCCCAACAGCATCAATCTCATCAATGAACA 672 Query 289058 TCACACACGGAGAAT-----TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 | ||| || |||| |||| || | ||| || || |||||||| | ||||| Sbjct 673 CTAAACAGGGTGAATTAGCCTTTGCCTTG---TTG--AACAAGTCTCTTACCCTAGATGC 727 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||| | ||||||| |||| |||| ||| || ||| |||| | | | || | || Sbjct 728 TCCGACACCAACAAACATCTCTATAAACTCCGAACCGGACAGTGAGAAAAACGGAACTCC 787 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || |||| ||| | |||| || ||||| |||||||| || ||||| | Sbjct 788 GGCTTCTCCGGCTATGGCCTTGGCCAAGAGAGTCTTCCCTGTTCCTGGCGGTCCTGTCAG 847 Query 289233 TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTA-TATTTCTCAGGGCTCTTTAAA 289290 | || || ||||| | ||| || |||| || || | | ||||| || | || || Sbjct 848 CAAGACACCTTTTGGGATTTTAGCACCCA--AGGCTGAGAACTTCTCGGGTGTTTTCAAG 905 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||||||| || || |||| || | || || || || |||||| || || Sbjct 906 AATTCTACTATCTCTTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCAACGTC 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471616275589812