Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq10676 529 2e-145 seq3 145 9e-30 seq3905 91.5 2e-13 seq813 84.2 3e-11 seq2 82.4 9e-11 >seq10676 Length=153368 Score = 529 bits (586), Expect = 2e-145 Identities = 721/1001 (72%), Gaps = 4/1001 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| ||||| || || | ||| |||| ||||||||||| || Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 ||||| || | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 1266 ATGATTCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1208 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 72412 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 1207 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 1149 Query 72413 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 72472 | || || || ||||| | |||| |||| || || || || || || ||||| | Sbjct 1148 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGA 1089 Query 72473 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTA 72532 |||||||||| || | | || || ||| | || ||||| |||||||| | || || Sbjct 1088 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 1029 Query 72533 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 1028 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 969 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 968 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 909 Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712 | || ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 908 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 849 Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 848 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 789 Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832 | || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| | Sbjct 788 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 729 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 |||| | || ||||| | | ||||| || || ||||| || || | || | | Sbjct 728 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 669 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || | ||||| |||||||||||||| || |||||||| |||||||| || || || | Sbjct 668 GGTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 609 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | | Sbjct 608 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 549 Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072 | | | || ||||| || | ||||| || | | ||||| |||| ||||| |||| Sbjct 548 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 489 Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 73132 |||| || || ||||| |||||||||||||| || ||| | ||| || | | Sbjct 488 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 429 Query 73133 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 73192 | |||| ||| || ||||| | || |||||||| |||||||||||||||||| | |||| Sbjct 428 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 369 Query 73193 CACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 73233 | ||||||||||| ||||||||||| ||| ||||||| || Sbjct 368 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTCTCCA 328 Score = 360 bits (398), Expect = 2e-94 Identities = 709/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 31969 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 32028 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||||||||| || || || |||||||| || | || | || ||||||||| || Sbjct 32029 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAG 32088 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 32089 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 32148 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||||||||| || ||||| || || |||| | || | | | ||| | | |||| Sbjct 32149 GCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGT 32208 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | || ||||| || || |||||||||||| || || |||| ||||||||| || || | Sbjct 32209 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGT 32268 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712 || ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 32269 GGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 32328 Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772 | |||| || |||| | || ||||| || ||| | || || || | || | Sbjct 32329 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 32388 Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832 | || || |||||||||| ||||| |||| || | |||||||||| || | Sbjct 32389 CTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 32448 Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 73892 || || ||||| || || || ||||| | || | || | || || || || ||| Sbjct 32449 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATT 32508 Query 73893 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 73952 || | || ||||||||||||||||| || || ||| |||| || | || | ||| Sbjct 32509 GGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTAT 32568 Query 73953 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 74012 | || || |||||||| || ||| | || || || | |||||| || Sbjct 32569 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 32613 Query 74013 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTT 74072 | | | | ||| |||| ||| | || || | || || || | ||||| |||| Sbjct 32614 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 32667 Query 74073 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 74132 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 32668 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 32727 Query 74133 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 74192 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 32728 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 32787 Query 74193 TAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 74252 | || | || |||||||| | ||||| | || || ||||| || || || || || Sbjct 32788 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 32847 Query 74253 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 74312 | ||||| ||||| || || ||||| || ||||| ||||| || |||||| | || |||| Sbjct 32848 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 32907 Query 74313 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 74372 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 32908 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 32967 Query 74373 AAGTCTTGCCACGAGGCAACGCACTATAA 74401 | || | ||||| || ||||| || ||| Sbjct 32968 AGGTTCTACCACGTGGAAACGCTCTTTAA 32996 >seq3 Length=29132933 Score = 145 bits (160), Expect = 9e-30 Identities = 367/552 (66%), Gaps = 6/552 (1%) Strand=Plus/Plus Query 73371 TTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTAC 73430 || || |||| |||||| ||| || || || || || | || ||||||||||| || | Sbjct 2931751 TTATTAATGACTGGTTACGGAGGGACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGC 2931810 Query 73431 TTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCT 73490 | || |||||||| || | | | || ||||||||| ||| || ||||| || || | Sbjct 2931811 TCTTTCCTTGTGCCTATTTCTCTTTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTT 2931870 Query 73491 CATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAG 73550 ||||||| || ||||| | || || ||| | || || | | ||||||| | | Sbjct 2931871 CATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATG 2931930 Query 73551 CAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCT-TTG-GGGACCAGA 73608 |||| || || |||| | || | | ||| ||| ||||| | ||| ||| || || Sbjct 2931931 CAGTTTCTACTCCTGCTAATAGTTTAACGCAT--TCT-TTGTTATTATTGTGGGTCCTGA 2931987 Query 73609 GGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATT 73668 |||||||||||| || || |||| |||||||| || || ||| ||||| || | Sbjct 2931988 AGCACAAGGAGATTTTAGTCGTTGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCT 2932047 Query 73669 ACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGT 73728 || | | || | | | ||| |||| ||| | | || ||||| |||| || ||| Sbjct 2932048 CCACAGTGCTTTCGAATTAATAAGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGT 2932107 Query 73729 TGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCAT 73788 | | || ||||| || ||| || | || || | || || || || | | Sbjct 2932108 TCAATTGCGACCTTATAATGCAATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGT 2932167 Query 73789 CTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGC 73848 ||||||||| ||||| | ||| || | |||||||||| |||||| || ||||| || Sbjct 2932168 CTTTCTAATTTATCC-TCAGGTCAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 2932226 Query 73849 AGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATT 73908 || || ||||| | || | || | || || || || ||| | | || || | Sbjct 2932227 GGCTATATTTCGGTTCATCATCTTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCT 2932286 Query 73909 TCATATGATGGG 73920 |||||||||||| Sbjct 2932287 TCATATGATGGG 2932298 >seq3905 Length=4339 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 73788 TCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCG 73847 |||||||||| ||||| |||| || | |||||||||| || ||| || ||||| | Sbjct 1295 TCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAG 1354 Query 73848 CAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCAT 73907 | | || ||||| | || | || | || || || || ||| | | || |||| Sbjct 1355 CGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGATATTGAACCCAT 1414 Query 73908 TTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTG 73967 ||||||||||||| || || ||| |||| || | || | |||| || || ||||||| Sbjct 1415 TTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTG 1474 Query 73968 CAACAGTACAGAACACATTGTATGAAGA 73995 | || ||| | || || || | |||||| Sbjct 1475 CTACTGTAGAAAATACTTTATTTGAAGA 1502 >seq813 Length=20179 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 73168 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAG 73227 |||||||||||||||||| | ||||| ||||||||||| ||||||||||| ||| |||| Sbjct 10706 ATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 10647 Query 73228 TCTACA 73233 ||| || Sbjct 10646 TCTCCA 10641 >seq2 Length=43799612 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 72275 TTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTT-CTAACTGCTGCTGCTTGTTTCATT 72333 |||| ||||||||||| || ||||| || | |||| | || | | | || ||| ||| Sbjct 8463553 TTGGATGGTTTGGTGTTTTGATGAT-CCTTATCTTATTGACCGTAGTTTCTGTTTTTATT 8463611 Query 72334 GTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGT 72393 | |||||||| |||| ||||||||| ||| | || || || | ||||| || | | Sbjct 8463612 ATCGCATTCATTGCTGTTCCTCCAGTAGATTTTGATGGTATTTGTGAACCTATTTCTCGA 8463671 Query 72394 TCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAAT 72452 ||| ||||| ||||| ||| | || || || ||||| | ||| |||| || || Sbjct 8463672 TCTCTTCTT-TATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTGCAGCTAT 8463730 Query 72453 AGGATTACACTTCTATCCCATCTGGGAAGCAGC 72485 || || || || ||| | | ||||||||| || Sbjct 8463731 TGGTTTGCATTTTTATTCAAACTGGGAAGCTGC 8463763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572797150018080