Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2371 226 3e-53 seq4 226 3e-53 seq6 221 1e-51 >seq2371 Length=6673 Score = 226 bits (250), Expect = 3e-53 Identities = 230/298 (77%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| | || ||| Sbjct 6513 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGG 6454 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| ||| || |||||| ||||| |||||| ||||||||| Sbjct 6453 ACGTCGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAG 6394 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || |||||||| |||| ||||| |||||| ||||| |||| | |||||| | Sbjct 6393 AAGGCGAGGACGTGTTTGACGAAGTGTCGCTCGCCGTCGTTGAGGTTTTGCTCCCAGTCG 6334 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||||| | |||||| || |||||||||||||||| ||||| ||||| || ||| Sbjct 6333 CGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTG 6274 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 ||||||||||| | ||| ||||| |||| ||||| | | || |||| |||||||| Sbjct 6273 TACATCTCCCAGATCTGCGGGTAGTGGATCGGGAACATGCAGAATCGGTCTGGGGTTG 6216 >seq4 Length=50002108 Score = 226 bits (250), Expect = 3e-53 Identities = 228/295 (77%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||||| ||||| | | |||| | || ||| Sbjct 15358835 GAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACCTGG 15358776 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| ||| |||||||| ||||| |||||| ||||||||| Sbjct 15358775 ACGTCGGACATGAACCGGGAGGCGAGGTTCTCCAGGACGATTCCGTCGGAGGCGGCGAAG 15358716 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| ||||| ||||||||||| ||||| |||| | |||||| | Sbjct 15358715 AAGGCTAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAGATTCTCCCAGTCGCGT 15358656 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| || ||| || || |||||||||||||||| ||||| |||||||| |||||| Sbjct 15358655 GTGTCTCCGGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTCTTGTAC 15358596 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 |||||||| | || |||| |||| ||||| | | || | || |||||||| Sbjct 15358595 ATCTCCCAGATCTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCTGGGGTTG 15358541 Score = 147 bits (162), Expect = 3e-29 Identities = 188/258 (73%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| |||||| |||| || || |||||||| || |||||||||||||| ||||| Sbjct 15359100 GATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGAT 15359041 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 | |||||| || || ||||| ||||| || || ||| ||| ||| ||| || || ||| Sbjct 15359040 CGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCGACGATCCTCTC 15358981 Query 869314 GGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCT 869373 || || || | ||| || || |||||||||||| ||||| | |||||| ||| Sbjct 15358980 CGCGAAAGTCT-GAGATCC-----GTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGC 15358927 Query 869374 CACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGAC 869433 || | || | || |||||||| || ||||| |||||| | || ||||||| Sbjct 15358926 GACGCAGGGGATGGTCTCGATGGCCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGAT 15358867 Query 869434 ATAGGTGTCGATCAGGAG 869451 |||||||||| |||||| Sbjct 15358866 GTAGGTGTCGAGCAGGAG 15358849 Score = 104 bits (114), Expect = 3e-16 Identities = 216/319 (68%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| ||||| || | | ||| || ||||||||||| |||| |||||||| Sbjct 15359430 CGCCTTCTGGTAATCGCCAACCCTCTTCTCAAAGAAGTTGGTCTTCCCCTGAAGCGAGAT 15359371 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||||||||| ||||| || | | ||| ||| || | || |||| | Sbjct 15359370 CAACTCCATCCAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCGCC 15359311 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 | || | || || || |||||||| ||||| | ||| || | |||||| || | Sbjct 15359310 CAAAAGCCTATCCGCCACGAACTCGATATACTGACTCATCAGATCACGGTTCATCCCCAC 15359251 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 | ||| ||| || | |||| ||||||||| |||||||||| || || ||| | Sbjct 15359250 CAACGCGCACGGAAGAGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCGCACAC 15359191 Query 868930 GATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 |||| | || | || || ||| | |||| | | || || |||| |||||||| Sbjct 15359190 GATC-GACTTCACGCGCTCCTCCGTGAGCTTCGTCCTCAACAAGGTATAGATCAGGCAGG 15359132 Query 868989 CAAAGTCGCAGTGCAACCC 869007 | || |||||||| | ||| Sbjct 15359131 CGAAATCGCAGTGAAGCCC 15359113 >seq6 Length=53636577 Score = 221 bits (244), Expect = 1e-51 Identities = 229/298 (77%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| ||||||||||||||||| ||||| | |||| | || ||| Sbjct 17375959 GAGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGG 17375900 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| ||| || |||||| ||||| |||||| ||||||||| Sbjct 17375899 ACGTCGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCCGTCGGAGGCGGCGAAG 17375840 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG---CGACACCCAGTGG 869809 || || |||||||| ||||| |||||||||||| ||||| |||| | |||||| | Sbjct 17375839 AAGGCGAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTTTGCTCCCAGTCG 17375780 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||||| | |||||| || |||||||||||||||| ||||| ||||| || ||| Sbjct 17375779 CGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTG 17375720 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT-TGGGGTTG 869926 ||||||||||| | ||| ||||| | || ||||| | | || |||| ||||||| Sbjct 17375719 TACATCTCCCAGATCTGCGGGTAGTGAATCGGGAACATGCAGAATCGGTCAGGGGTTG 17375662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106263077444292