Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 4e-13 seq4 87.8 1e-12 seq1946 82.4 6e-11 >seq7 Length=27187321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| || || || ||||| || |||| ||| | Sbjct 640342 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACTCTCGAGGTTGAGAGCTCC 640283 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| |||||| | || |||||| Sbjct 640282 GACACTATTGACAATGTCAAGGCGAAGATACAGGACAAGGAAGGCATCCCTCCGGATCAG 640223 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||||| ||| ||||| ||||||||||||| | || | || || |||||| Sbjct 640222 CAGAGGCTTATTTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACGCTCGCTGACTACAAC 640163 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || || || || ||| | ||| | || || Sbjct 640162 ATCCAGAAGGAGTCGACGCTTCACCTTGTCTT 640131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| || |||||||| ||||| || | || ||| | | Sbjct 456713 ATGCAGATCTTCGTCAAAACCTTGACCGGCAAGACCATCACTCTTGAGGTGGAAAGTTCC 456772 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 | ||| ||| | | || ||| || ||| ||||| |||||| | || ||| || Sbjct 456773 AACACTATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCGGACCAG 456832 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | || |||| || |||||| Sbjct 456833 CAGCGTCTCATCTTTGCTGGGAAGCAGCTAGAGGATGGTCGCACTTTGGCTGACTACAAC 456892 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| || || | ||| |||| Sbjct 456893 ATTCAGAAAGAGTCGACCCTTCACTTGGT 456921 >seq4 Length=50002108 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| ||||||| || ||||| ||| |||| ||| | Sbjct 45703293 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGTCC 45703352 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||||||||| | || |||| Sbjct 45703353 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGAT 45703412 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || ||| | || | || ||||||||||| ||||||| | | || |||| || ||| Sbjct 45703413 CAGCAGAGATTGATCTTCGCCGGTAAACAGCTCGAGGATGGCCGTACTTTGGCTGACTAC 45703472 Query 110450 AACATTCAAAAAG 110462 ||||| || |||| Sbjct 45703473 AACATCCAGAAAG 45703485 >seq1946 Length=8506 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||||||||| ||||| || |||| ||| | Sbjct 1966 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGTCC 2025 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| ||||||||||| | || |||| Sbjct 2026 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCTCCGGAT 2085 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || ||||||||||| || |||| | | || |||| || ||| Sbjct 2086 CAGCAGCGTCTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACTTTGGCTGACTAC 2145 Query 110450 AACATTCAAAAAG 110462 ||||| || |||| Sbjct 2146 AACATCCAGAAAG 2158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412787883631268