Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 190 3e-42 seq2371 176 7e-38 seq6 176 7e-38 >seq4 Length=50002108 Score = 190 bits (210), Expect = 3e-42 Identities = 229/310 (74%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 ||||| |||||| ||| || || |||||||| || |||||||||||||| ||||| Sbjct 15359100 GATCAGCTCGTTGGAGAAGGTCAGACCAGGCATGAGCCCACGCTTCTTGAGCCAGAAGAT 15359041 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 | ||||| || || ||||| ||||| || || ||| ||| ||| |||||| || ||| Sbjct 15359040 CGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCGACGATCCTCTC 15358981 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCT 794534 || ||||| | || || || |||||||||||| ||||| | ||||| ||| Sbjct 15358980 CGCGAAAGTCTG-AGATCC-----GTCGATCCACTTCATGGCCCATTGGGCCTTCTTCGC 15358927 Query 794535 CACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGAC 794594 || |||| | || |||||||| || ||||| |||||| |||| ||||||| Sbjct 15358926 GACGCAGGGGATGGTCTCGATGGCCCGGAAGAGATGGTCCCTCTCCTTGTTATCCTTGAT 15358867 Query 794595 GTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAA 794654 ||||||||||| ||||| || |||||||||||||||| || || ||||||||||| Sbjct 15358866 GTAGGTGTCGAGCAGGAGGCTATACATCTCTGAGTGGATGTTCTCAATCGCGATCTGGAA 15358807 Query 794655 GCCATAAAAG 794664 ||| || ||| Sbjct 15358806 GCCGTAGAAG 15358797 Score = 188 bits (208), Expect = 1e-41 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||| || |||||| ||| ||| |||||||| ||||| ||| Sbjct 15358790 GCCTCGGAGACCTGGACGTCGGACATGAACCGGGAGGCGAGGTTCTCCAGGACGATTCCG 15358731 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| ||||| |||||||| ||||| ||||| ||||| ||||| |||| Sbjct 15358730 TCGGAGGCGGCGAAGAAGGCTAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAGA 15358671 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||| | ||||| || ||| ||||| |||||||||||||| |||||||| Sbjct 15358670 TTCTCCCAGTCGCGTGTGTCTCCGGAGAGATCGACTTCCTCGGCGGTCCAGAAGGAGGCT 15358611 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| |||||||||||||| ||| || |||| |||| ||||||| Sbjct 15358610 TCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACA 15358562 Score = 95.1 bits (104), Expect = 2e-13 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||||| || | | ||| || ||||||||||| |||| |||||||||||||||||| Sbjct 15359420 TAATCGCCAACCCTCTTCTCAAAGAAGTTGGTCTTCCCCTGAAGCGAGATCAACTCCATC 15359361 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 || ||||| || ||| ||| |||| || |||| |||| | | || | Sbjct 15359360 CAATCAAACGGATTCGCCACACCGTACACCTTCCCGTACCCAAGCGCGCCCAAAAGCCTA 15359301 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CAC 794086 || || ||||| || || ||||| | ||| || | |||||| || | | ||| ||| Sbjct 15359300 TCCGCCACGAACTCGATATACTGACTCATCAGATCACGGTTCATCCCCACCAACGCGCAC 15359241 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCG 794132 || || | |||| |||||||| |||||||||| || || ||| Sbjct 15359240 -GGAAGAGCGTCGCACACAAACTCCCTCTCGATCTCCACCGCGTCG 15359196 >seq2371 Length=6673 Score = 176 bits (194), Expect = 7e-38 Identities = 179/233 (77%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || ||||| || |||||| ||| ||| || ||||| ||||| || Sbjct 6469 GGCCTCGGAGACCTGGACGTCGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCC 6410 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||||||||| |||| ||||| |||||| ||||| |||| Sbjct 6409 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGACGAAGTGTCGCTCGCCGTCGTTGAG 6350 Query 796269 CGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 |||||| | ||||| | ||||||||| |||||||||||||| ||||| Sbjct 6349 GTTTTGCTCCCAGTCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGA 6290 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| ||||| || |||||||||||||| ||| | ||||| |||| ||||||| Sbjct 6289 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTGCGGGTAGTGGATCGGGAACA 6237 Score = 127 bits (140), Expect = 3e-23 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 794502 GATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCG 794561 ||||||||||| ||||| | ||||||||| | || | || | ||| ||||| ||||| Sbjct 6637 GATCCACTTCAAGGCCCATTGGGCCTTTTTCTTTACGCAAGGGATCGTCTCGATCGCGCG 6578 Query 794562 AAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGT 794621 ||||| |||||| |||| ||| |||| ||| ||||| | |||||| ||| | Sbjct 6577 GAAGAGATGGTCCCTCTCCTTGTTGTCTTTGATGTAAGTGTCTAAGAGGAGACTGTACAT 6518 Query 794622 CTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||| ||||||||||| |||||||||||||||||||| || ||| Sbjct 6517 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAG 6475 >seq6 Length=53636577 Score = 176 bits (194), Expect = 7e-38 Identities = 179/233 (77%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || ||||| || |||||| ||| ||| || ||||| ||||| || Sbjct 17375915 GGCCTCGGAGACCTGGACGTCGGACATGAAACGGGAGGCGAGATTCTCGAGGACGATCCC 17375856 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||||||||| ||||| ||||| |||||| ||||| |||| Sbjct 17375855 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAG 17375796 Query 796269 ---CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 |||||| | ||||| | ||||||||| |||||||||||||| ||||| Sbjct 17375795 GTTTTGCTCCCAGTCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGA 17375736 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||| ||||| || |||||||||||||| ||| | ||||| | || ||||||| Sbjct 17375735 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTGCGGGTAGTGAATCGGGAACA 17375683 Score = 100 bits (110), Expect = 5e-15 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 794502 GATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCG 794561 ||||||||||| ||||| | ||||| ||| | || | || | || ||||| ||||| Sbjct 17376083 GATCCACTTCAAGGCCCATTGGGCCTTCTTCTTGACGCAAGGGATGGTCTCGATCGCGCG 17376024 Query 794562 AAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGT 794621 ||||| |||||| |||| ||| |||| ||| || || | | ||| ||| | Sbjct 17376023 GAAGAGATGGTCCCTCTCCTTGTTGTCTTTGATGTAAGTATCTAACAAGAGGCTGTACAT 17375964 Query 794622 CTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||| ||||||||||| ||||| |||||||||||||| || ||| Sbjct 17375963 CTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCGTAGAAG 17375921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915110745186764